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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACATAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGATGAATAACAAAGATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgtttctatgcttctgtcttctcagcttctttatttatttagttttagtttaaacagagttccatataactcatcttgtggccctggtacag

Basic information

species Vitis vinifera
transcript Vv16s0050g01850.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01850.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G159307_T01 (Zea mays), 5'ss of exon 8
ACTACATAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGATGAATAACAAAGATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgtttctatgcttctgtcttctcagcttctttatttatttagttttagttta-aacagagttccatataactcatcttgtggccctggtacag
| || || || ||||||||  | |||||  | || ||||| ||||||||||||||||||||||| ||||||||||| ||  | ||  ||||  | |||||||    | |    | |   |   |  |   | |    | |||  |   ||||    |  || |   || ||                                 
AGTATATCGAGGAGATTGTGGTGTCTGCGGTTTCATATCACTTGATGAATAACAAAGATCCAGATTACCGAAATGGGAAATTAGTTCTATCCACAAAGAGgttagcagatcaatatagttctctgggatcttttcattccttcctcggtttatgactctttcatggcacag---------------------------------

upper sequence: Vv16s0050g01850.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G058491_T01 (Zea mays), 5'ss of exon 8
ACTACATAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGATGAATAACAAAGATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgt----agat-acaattgtttctatgcttctgtcttctcagcttctttatttatttagttttagtttaaacagagttccatataactcatcttgtggccctggtacag
| || ||||| || |||||  | |||||| | || ||||| ||||||||||||||||||||||| || |||||||| ||  | ||  ||||  | |||||||    |||| | ||| |||| | ||  ||| |    |   |||| ||  ||  | | | ||   || |||||                                   
AGTATATAGAGGAAATTGTGGTGTCTGCAGTTTCGTATCACTTGATGAATAACAAAGATCCAGAGTATCGAAATGGGAAATTAGTTCTATCCACAAAGAGgttagcagattaaaatagtttttgtggatcttttcattt--cttccttggtttatgactcttccattgaacag-----------------------------------

upper sequence: Vv16s0050g01850.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G23250.1 (Glycine max), 5'ss of exon 8
ACTACATAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGATGAATAACAAAGATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgtttctatgcttctgtcttctcagcttctttatttatttagttttagtttaaacagagttccatataactcatcttgtggccctggtacag
| || || ||||| |||||| |||||||| ||||||| ||||||||||||| ||| ||||| |||||||||||||||||||| || |||||  |||| ||||| |||    |  | | |||  | |||   |  |  |  ||   | |     |||||   | |      ||  || | |                       
ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatat--cttgtccaatgactatgtaagc--aattgtttacatgacaagattttatagttactgatcttggatgtgaacag-------------------

upper sequence: Vv16s0050g01850.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G29040.1 (Glycine max), 5'ss of exon 8
ACTACATAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGATGAATAACAAAGATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaattgtttctatgcttctgtcttctcagcttctttatttatttagttttagtttaaacagagttccatataactcatcttgtggccctggtacag
| || || ||||| |||||| |||||||| ||||||| ||||||||||||| ||| ||||| || ||||||||||||||||| || |||||  |||| ||||| ||||  |||   | |||  | |||               |   | ||| ||      | | |||| || |   | ||| ||||||  |   ||  ||||
ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAGTACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatac--ttgcc-caatgactatgt---------------aagcaattaattacg---tgaccagattttctagttactgatcttg--gatgtga-acag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716574|gb|FC066235.1|FC066235
EST:     AACAAAGATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAG                         TTTGTCCCATGGCTTGAATATATTCCAGCAAGGTAAAAGTGGTGGAAAAGA
genomic: AACAAAGATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGgtagatacaa ... cctggtacagTTTGTCCCATGGCTTGAATATATTCCAGCAAGGTAAAAGTGGTGGAAAAGA