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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACACAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGTTGAATAACAAAGATCCAGAATACCGAAACGGAAAGCTTGTCATATCTTCTAAGAGgtagatacaattgtttctatgcttgtgtcttctttgcttatttatttatttttatttgaaacaaagttccatataaatattcttgtggccctggtacag

Basic information

species Vitis vinifera
transcript Vv16s0050g01840.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G159307_T01 (Zea mays), 5'ss of exon 8
ATTACACAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGTTGAATAACAAAGATCCAGAATACCGAAACGGAAAGCTTGTCATATCTTCTAAGAGgtagatacaattgtttctatgcttgtgtcttctttgcttatttatttatttttatttgaaacaaagttccatataaatattcttgtggccctggtacag
| || |  || ||||||||  | |||||  | || ||||| ||| ||||||||||||||||||| |||||||| || ||  | ||  ||||  | |||||||    | |    | |   |   || |   | ||   |  ||  |   ||| |   |    ||  |  |                              
AGTATATCGAGGAGATTGTGGTGTCTGCGGTTTCATATCACTTGATGAATAACAAAGATCCAGATTACCGAAATGGGAAATTAGTTCTATCCACAAAGAGgttagcagatcaatatagttctctgggatcttttcattccttcctcggtttatgactctttcatggcacag----------------------------

upper sequence: Vv16s0050g01840.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G23250.1 (Glycine max), 5'ss of exon 8
ATTACACAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGTTGAATAACAAAGATCCAGAATACCGAAACGGAAAGCTTGTCATATCTTCTAAGAGgtagatacaattgtttctatgcttgtgtcttct-ttgcttat-ttatttatttttatttgaaacaaagttccatataaatattcttgtggccctggtacag
|||| |  ||||| |||||| |||||||| ||||||| |||||| |||||| ||| ||||| ||||||||||| |||||||| || |||||  | || ||||| |||    |  | | |||  | |||   |  ||| |||  | |     ||||||    |   |  ||  || | || |                    
ATTATATTGAAGAAATTGTAGTATCTGCATTATCTTACCATTTGATGAATACCAAGGATCCGGAATACCGAAATGGAAAGCTAGTTATATCAGCCAATAGgtaaatat--cttgtccaatgactatgtaagcaattgtttacatgacaagattttatagttactgatcttggatgtgaacag-------------------