Sequence
atgc intronic sequence ATGC exonic sequenceCCGTCAATTGGAAAAGAGTATTTCATTCATAAGAACCTTGAAGCAATTGTTACAAACTACCCTTACAGAAAGAACTTGGCTGAGGAAGATATTGTCAAAGgttaccttccatgttcttctcttatcataagcagcagcagaagactgaattaatcagtttttgctgaatattttgatcttatcattcaaagaatttactaatgattcctatcgtgaacatgtgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G18110.1 (Glycine max), 5'ss of exon 13
CCGTCAATTGGAAAAGAGTATTTCATTCATAAGAACCTTGAAGCAATTGTTACAAACTACCCTTACAGAAAGAACTTGGCTGAGGAAGATATTGTCAAAGgttaccttccatgttcttctctta--tcataagcagcagcagaagactgaattaatcagtttttgc-tgaatattttgatcttatcattcaa--agaatttactaatgattcctatc----gtgaacatgtgacag
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CCATCAATTGGAAAAGAGTATTTTAATCAGTTGAACCTTGAAGCAATTGTTACAAATTATCCCTACAGAAAAAACCTACCTAAAGAAGATATTCTCAAAGgttagcttcccaagaaggctggaaatttctgctcaacttgattttgctatttttttctgtgcatgtgtgcatgctttatttcacttattcaacttgattgaactaatgaatgctatacatattgaacttgtaatag
upper sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G35980.1 (Arabidopsis thaliana), 5'ss of exon 11
CCGTCAATTGGAAAAGAGTATTTCATTCATAAGAACCTTGAAGCAATTGTTACAAACTACCCTTACAGAAAGAACTTGGCTGAGGAAGATATTGTCAAAGgttaccttccatgttcttctcttatcataagcagcagcagaagactgaattaatcagtttttgctgaatattttgatcttatcattcaaagaatttactaatgattcctatcgtgaacatgtgacag
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CCAGAAATTGGGAAAGAGTACTTCAACCATAAGAACCTTGAAGAAATTGTTAAAAGCTATCCGTACAAGATAAATCTACCTGAGGACGATGTAGTCAAAGgtaaagt--caggttgttctgatgttctttactttgctttgataatcactggacta--tcttgcatgatgactgttttttttttttcacgaactatcacag--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30304109|gb|CB980903.1|CB980903EST: TACAAACTACCCTTACAGAAAGAACTTGGCTGAGGAAGATATTGTCAAAG AAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAAT
genomic: TACAAACTACCCTTACAGAAAGAACTTGGCTGAGGAAGATATTGTCAAAGgttaccttcc ... catgtgacagAAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGTCAATTGGAAAAGAGTATTTCATTCATAAGAACCTTGAAGCAATTGTTACAAACTACCCTTACAGAAAGAACTTGGCTGAGGAAGATATTGTCAAAGgttaccttccatgttcttctcttatcataagcagcagcagaagactgaattaatcagtttttgctgaatattttgatcttatcattcaaagaatttactaatgattcctatcgtgaacatgtgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA