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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTGGAGCAAAGTTGTCGGAGGGTGTATTTGTTGGTTCCTTCTTATCAATGTCATCAACAGCAGTGgtactttttctgaacatttctgatacttcactattttcttctcttggttgccgcaaatatgtcatgtttacgcttcttccaattttcttttactag

Basic information

species Vitis vinifera
transcript Vv16s0022g02060.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G27940.1 (Glycine max), 5'ss of exon 11
TTATGTGGAGCAAAGTTGTCGGAGGGTGTATTTGTTGGTTCCTTCTTATCAATGTCATCAACAGCAGTGgtactttttctgaacatttctgatacttcactattttcttc--tcttggttgccgcaaatatgt------catgtttacgcttcttccaattttcttttactag
|||| |||||| || ||||| |||||||| ||||| ||||||||  ||||||||||||||||||||||||||   |||   | ||||||  | |    ||| | | | |   | |  || |     ||||  |      ||||  | |  |  ||     |  ||||||| ||
TTATTTGGAGCCAAATTGTCTGAGGGTGTTTTTGTCGGTTCCTTTCTATCAATGTCATCAACAGCAGTGgtatgcttttacaccatttcccaaaacatactgtatacattgttatcagtggtttttaatagattctaagcatgggttcattatttatttctaccttttaccag

upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G32820.1 (Glycine max), 5'ss of exon 7
TTATGTGGAGCAAAGTTGTCGGAGGGTGTATTTGTTGGTTCCTTCTTATCAATGTCATCAACAGCAGTGgtactttttctgaacatttctg-----atacttcactattttcttctcttggttgccgcaaatatgt---catgtttacgcttcttccaattttcttttactag
|||| |||||| || ||||| |||||||| ||||| ||||||||  | ||||||||||| ||||||||||||  |||||  | ||||||       ||||| ||    ||  ||    |||||      | | | |   ||||  | |  |  ||    ||  ||||||| ||
TTATTTGGAGCCAAATTGTCTGAGGGTGTTTTTGTCGGTTCCTTTCTGTCAATGTCATCTACAGCAGTGgtatgttttcacaccatttcccaaaacatactgcatacattgttttcagtggtttttaatagtttctaagcatgggttcattatttatttttaccttttaccag

upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G51710.2 (Arabidopsis thaliana), 5'ss of exon 10
TTATGTGGAGCAAAGTTGTCGGAGGGTGTATTTGTTGGTTCCTTCTTATCAATGTCATCAACAGCAGTGgtactttttctgaacatt-tctgat--acttcactattttcttctcttggttgccgcaaatatgtcat-gtttacgcttct--tccaattttc--ttttactag
|| |||||||||| |||||| |||||| | ||||||||| |||| ||||| ||||||||||| ||||||||| ||||  |     || |||  |  | || | ||         ||   || |||     || |||  ||||  | ||||  ||||  | ||  ||| || ||
TTGTGTGGAGCAAGGTTGTCAGAGGGTATTTTTGTTGGTGCCTTTTTATCTATGTCATCAACTGCAGTGgtatttttcttttcttttgtcttctcaagtttaatacaaaagctactctctttccggtttcatctcagagtttctgtttctaatccacatgtcaatttgaccag