1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CACATACCTTTGGTCTTGCTCTTGCATCATCAGCCCCCACAGCTCTTGTACAAGTCATAGAGATGGCATGCATTCAAGAAGCAGGCCATCTGAGATGCAGgttttcttatttgaccttcttcttcctttactttttaccgacttcaaattcagaaatactgtttcatttgtagtaagaaggatatatttttatgaaaaat...
species | Vitis vinifera |
transcript | Vv16s0013g01430.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAAGTCATAGAGATGGCATGCATTCAAGAAGCAGGCCATCTGAGATGCAG TGGGGCTGAGATTGGAAGATTTGTGACCATGCTAAAGAACCCTTCTCCAGTEST: gi|110411520|gb|EC977237.1|EC977237
genomic: CAAGTCATAGAGATGGCATGCATTCAAGAAGCAGGCCATCTGAGATGCAGgttttcttat ... gttttcacagTGGGGCTGAGATTGGAAGATTTGTAACCATGCTAAAGAACCCTTCTCCAGT
EST: CAAGTCATAGAGATGGCATGCATTCAAGAAGCAGGCCATCTGAGATGCAG TGGGGCTGAGATTGGAAGATTTGTAACCATGCTAAAGAACCCTTCTCCAGTEST: gi|110360399|gb|EC923470.1|EC923470
genomic: CAAGTCATAGAGATGGCATGCATTCAAGAAGCAGGCCATCTGAGATGCAGgttttcttat ... gttttcacagTGGGGCTGAGATTGGAAGATTTGTAACCATGCTAAAGAACCCTTCTCCAGT
EST: CAAGTCATAGAGATGGCATGCATTCAAGAAGCAGGCCATCTGAGATGCAG TGGGGCTGAGATTGGAAGATTTGTAACCATGCTAAAGAACCCTTCTCCAGT
genomic: CAAGTCATAGAGATGGCATGCATTCAAGAAGCAGGCCATCTGAGATGCAGgttttcttat ... gttttcacagTGGGGCTGAGATTGGAAGATTTGTAACCATGCTAAAGAACCCTTCTCCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACATACCTTTGGTCTTGCTCTTGCATCATCAGCCCCCACAGCTCTTGTACAAGTCATAGAGATGGCATGCATTCAAGAAGCAGGCCATCTGAGATGCAGgttttcttatttgaccttcttcttcctttactttttaccgacttcaaattcagaaatactgtttcatttgtagtaagaaggatatatttttatgaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaaa