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GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctctacatttcaacttttactagctattgaatgacctaatggaagtgaaatcatacataattttttcagtaacaagtagattatagaggaatagt...
species | Vitis vinifera |
transcript | Vv15s0046g03520.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|110701264|gb|EE078642.1|EE078642
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AG-AAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|110702531|gb|EE081351.1|EE081351
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|71870941|gb|DT019996.1|DT019996
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|22015208|gb|BQ800242.1|BQ800242
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|30254563|gb|CB971308.1|CB971308
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTTTCTTCCTTGCCAEST: gi|110722626|gb|EE099031.1|EE099031
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTEST: gi|110689404|gb|EE065600.1|EE065600
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCT
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTEST: gi|71867011|gb|DT016066.1|DT016066
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCT
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|351052425|gb|FQ452458.1|FQ452458
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGACGATACTGTEST: gi|110693362|gb|EE069529.1|EE069529
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGT
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCAEST: gi|30253435|gb|CB970986.1|CB970986
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACCCAG TCCCCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|110369745|gb|EC933913.1|EC933913
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCAEST: gi|110377595|gb|EC942672.1|EC942672
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|30296186|gb|CB972980.1|CB972980
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCAEST: gi|110374344|gb|EC939025.1|EC939025
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|349826399|gb|FQ417896.1|FQ417896
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|30253357|gb|CB970908.1|CB970908
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|30254481|gb|CB971226.1|CB971226
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: GGAAATGACCATGAGATTTATGAATC-GANACGGACTGTGGGTCACAC-G ANCACCAGCCCTGATGATACTGTAGEST: gi|156736254|gb|EV240375.1|EV240375
genomic: G-AAATGACCATGAGATTTATGAATCAGA-ACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagT-CACCAGCCCTGATGATACTGTAG
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|110388071|gb|EC952787.1|EC952787
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|33408487|gb|CF214114.1|CF214114
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGAGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCAEST: gi|110384439|gb|EC948876.1|EC948876
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCAEST: gi|32246999|gb|CD712818.1|CD712818
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|351053383|gb|FQ455719.1|FQ455719
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGAACGGCTCTCTEST: gi|110708707|gb|EE086556.1|EE086556
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCT
EST: AAGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAAAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|351019263|gb|FQ429423.1|FQ429423
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|71867285|gb|DT016340.1|DT016340
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|34364395|gb|CF405980.1|CF405980
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCAEST: gi|33406828|gb|CF212455.1|CF212455
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCCTTGCCEST: gi|110400084|gb|EC966626.1|EC966626
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCC-TTGCC
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCAEST: gi|110725007|gb|EE101335.1|EE101335
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCAEST: gi|33406730|gb|CF212357.1|CF212357
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCTTGCCAEST: gi|33410547|gb|CF216174.1|CF216174
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCCTTGCCA
EST: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGAGTCACACAG TCACCAGCCCTGATGATACTGTAGAGCAGTGTGCAGCTCTCTTCCCTTGC-EST: gi|110707835|gb|EE084684.1|EE084684
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTAGAGCAGTGTACGGCTCTCTTCC-TTGCC
EST: AG-AAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAG TCCCCACCCCTGATGATAATGTA
genomic: AGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctcta ... tttttctcagTCACCAGCCCTGATGATACTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGAAATGACCATGAGATTTATGAATCAGAACGGACTGTGGGTCACACAGgtgagctctacatttcaacttttactagctattgaatgacctaatggaagtgaaatcatacataattttttcagtaacaagtagattatagaggaatagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaata