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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAAAAAGAGGAAGAAGTTGTTGCTGTTATAGCCCATGAACTGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgccattgctttcttggaaaatgatttcttaatgatcccttaagtcctgtctagtgatattgttccggtgctggcatttacaaattcataaatt...

Basic information

species Vitis vinifera
transcript Vv15s0046g02040.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814570|gb|FQ399210.1|FQ399210
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|30304044|gb|CB980838.1|CB980838
EST:     TGGGGCATTGGAAACTTAATCGTACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|351052220|gb|FQ452374.1|FQ452374
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|351043081|gb|FQ451254.1|FQ451254
EST:     TGGGGCATTGGAAGCTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|110387119|gb|EC951763.1|EC951763
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|351012828|gb|FQ430391.1|FQ430391
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|351045038|gb|FQ449292.1|FQ449292
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGTAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|30304107|gb|CB980901.1|CB980901
EST:     TGGGGCATTGGAAACTTAATCGTACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|351040629|gb|FQ438173.1|FQ438173
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|351033796|gb|FQ447834.1|FQ447834
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|349820667|gb|FQ408496.1|FQ408496
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|351044625|gb|FQ443156.1|FQ443156
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|351043828|gb|FQ452622.1|FQ452622
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|351029807|gb|FQ427647.1|FQ427647
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
EST: gi|351052441|gb|FQ452474.1|FQ452474
EST:     TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAG                         ATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT
genomic: TGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgcc ... atcaatgcagATTCTTACATTCTTGCAATTTGGAGGATATACACTTGTGAGGAACTCGGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCAAAAAAGAGGAAGAAGTTGTTGCTGTTATAGCCCATGAACTGGGGCATTGGAAACTTAATCATACAATGTACTCTTTCATTGCTGTGCAGgtatgctgccattgctttcttggaaaatgatttcttaatgatcccttaagtcctgtctagtgatattgttccggtgctggcatttacaaattcataaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaaaa