Sequence
atgc intronic sequence ATGC exonic sequenceGACATTCAAGAGGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGATTGTGCTTCAGgtttgacttacccactgcatacatgcaatcaaacatgagaatttgtttctatgttgttttccgtagtcttaaaaaatttgactggaccagggcggaatca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 10
GACATTCAAGAGGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGATTGTGCTTCAGg------tttgacttacccactgcat-acatgcaatcaaacatgagaatttgttt---------ctatgttgttttccgtagtcttaaaaaattt---gactggaccagggcggaatca-----------------------
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GATATTCAAGAAGCACATGCTGGTCAAATTGTTGCTGTCTTTGGTGTTGATTGTGCGTCAGgtaaatttttgagtgaagtgtagggccacaggctattcaagaagtacctctgtccactatactaccatgtgctcttcgattttctgttgacattttcggatttgttctgtgttggtctgattatttgttctcgcatcaatag
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G056393_T02 (Zea mays), 5'ss of exon 10
GACATTCAAGAGGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGATTGTGCTTCAGgtttgacttacccactgcatacatgcaatcaaacatgagaatttgtttctatgttgttttccgtagtcttaa---aaaatttgactggaccagggcggaatca
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GATATTCAAGAAGCATATGCTGGCCAAATTGTTGCTGTTTTTGGTGTTGATTGTGCATCAGgt---acgcagacaa-acaaggggacaatcttactttattttatagttctgt-ttacttcatttattctggatctgacttttcacttctctttgtcaatag--
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 5
GACATTCAAGAGGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGATTGTGCTTCAGgtttgacttacccactgcatacatgcaatcaaacatgagaatttgtttctatgttgttttccgtagtcttaaaaaatttgactggaccagggcggaatca------
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GACATTCAAGAGGCTCATGCTGGGCAAATAGTTGCTGTATTTGGTGTCGAATGTGCATCAGgttattcttttgtcttttcttgaacctatgcattttttgaatttg-----atattgctc-ctgtattgtaatttattttgggtgggtaggtgtttgccaagaatct
upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G16460.1 (Glycine max), 5'ss of exon 10
GACATTCAAGAGGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGATTGTGCTTCAGgtt-tgacttacccactgcatacatgcaatcaaacatgagaatttgtttctatgttgttttccgtagtcttaaaaaatttgactggaccagggcggaatca
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GACATTCAAGAGGCTCATGCTGGGCAAATAGTTGCTGTATTTGGTGTCGACTGTGCATCAGgttattcttttgtctttgcttaaacctatgcattttttgaattttatattgctcctgtgttg-gaatttattttgggtgggtaggtgtttgccaagaatctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71863690|gb|DT012745.1|DT012745EST: GGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGATTGTGCTTCAG GTGATACTTTTACTGATGGGTCAGTGAGATACACCATGACCTCTATGAATG
genomic: GGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGATTGTGCTTCAGgtttgactta ... ttgtcatcagGTGATACTTTTACTGATGGGTCAGTGAGATACACCATGACCTCTATGAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACATTCAAGAGGCCCATGCTGGGCAAATAGTTGCTGTCTTCGGTGTTGATTGTGCTTCAGgtttgacttacccactgcatacatgcaatcaaacatgagaatttgtttctatgttgttttccgtagtcttaaaaaatttgactggaccagggcggaatca
- - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat