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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTATGTTGGCTATAATGAGTCAGGTCGCCGTATTGACAGCAGTTATATGCAGGGTTCTCCTGCCAAAATCCGGATGGGCACCAATGCACTAGTTCCTGgtaaatatgaattacaatattcgtctgtgctttctttgttaatagtaatagaagtattttccataacccaacataaagtaaaagcggttagtagctgaaacagtgaatttgtgcag

Basic information

species Vitis vinifera
transcript Vv15s0021g01850.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g01850.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G14250.1 (Glycine max), 5'ss of exon 5
CACTATGTTGGCTATAATGAGTCAGGTCGCCGTATTGACAGCAGTTATATGCAGGGTTCTCCTGCCAAAATCCGGATGGGCACCAATGCACTAGTTCCTGgtaaa---tatgaattacaatattcgtctgtgcttt----ctttgttaatagtaatagaagtattttccataac------ccaacataaagtaaaagcggttagtagctgaaacagtgaatttgtgcag------------------------------
|||||| ||||||||||||| || || || ||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||| | | ||||||| ||| ||   ||| |  || | || |      | | ||    |||| | | ||  | ||    |  ||| | | |       |   |      | ||||     |  ||  ||   | | | |      ||                              
CACTATATTGGCTATAATGAATCTGGACGTCGTATTGACAGCACTTATTTGCAGGGTTCTCCTGCCAAAATCCGCATGGGTACCAAGGGATTAGTTCCAGgttaaaattataagatagagtactatcaatttccttgcaactttatgagtaa-agtattcatcctttacttgatttctgtctgtctctcccttaaagaacccaaaaggggaggaactaagtgctgaaagaactgagaaaactacatttttctgatgtag

upper sequence: Vv15s0021g01850.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G26680.1 (Glycine max), 5'ss of exon 5
CACTATGTTGGCTATAATGAGTCAGGTCGCCGTATTGACAGCAGTTATATGCAGGGTTCTCCTGCCAAAATCCGGATGGGCACCAATGCACTAGTTCCTGgtaaatatgaattacaatattcgtctgt-gctttctttgttaata-gtaatagaagtattt-tccataacccaacataaagtaaaagcggttagtagctgaaac---agtgaatttgtgcag----------------------------------
|||||| ||||||||||||| || || || ||||||||||||| |||| |||||||| |||| ||||||||||| ||||||||||| | | | ||||| ||| || ||   |||  || |    || |   | || |||  | |   ||| | |||||||  ||| |  |   |  |          |    || | |  |||    ||  |||  ||||||                                  
CACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGCACTTATTTGCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGATTGGTTCCAGgttaaaatt--ttaagatttagtactatcaatatccttgcaactttataagaaaagtattcatcctttgcttgatttctgtctctcccttaaagaaaccaaaaggggaggaaataagtgcagaaagaaatgataaaagtacatttttcttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732182|gb|EE107246.1|EE107246
EST:     GCAGGGTTCTCCTGCCAAAATCCGGATGGGCACCAATGCACTAGTTCCTG                         GATTTGAGGAAGGAATTCGAGACATGAAACCTGGTGGAAAGAGAAGAATAA
genomic: GCAGGGTTCTCCTGCCAAAATCCGGATGGGCACCAATGCACTAGTTCCTGgtaaatatga ... atttgtgcagGATTTGAGGAAGGAATTCGAGACATGAAACCTGGTGGAAAGAGAAGAATAA