1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaatgatcttggtcactttatggcacatatgatggatgaagctaaacaaccataaatggatagaaattttgagacgaaataatatgatttttaa...
species | Vitis vinifera |
transcript | Vv14s0068g01280.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGAAAGTGCAATCAATTCTTGAAGGGCTATGTGACAGCACAAACAG TGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGGEST: gi|110364030|gb|EC927670.1|EC927670
genomic: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaat ... tttaatgcagCGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
EST: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAG CGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGGEST: gi|45770351|gb|CN006203.1|CN006203
genomic: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaat ... tttaatgcagCGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
EST: GAGAAGAAAGTGCAATCAATTCTTGAAGGGCTATGTGACAGCACAAACAG TGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGGEST: gi|349827680|gb|FQ422548.1|FQ422548
genomic: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaat ... tttaatgcagCGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
EST: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAG CGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGGEST: gi|110694446|gb|EE071558.1|EE071558
genomic: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaat ... tttaatgcagCGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
EST: GACAGCACAAACAG CGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGGEST: gi|110688297|gb|EE066689.1|EE066689
genomic: GACAGCACAAACAGgcaagtcaat ... tttaatgcagCGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
EST: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAG CGCATTTTGGAAATCTGAGGATGACGCANGAGGGATGGCTGGTCTAGGAGGEST: gi|351022393|gb|FQ445168.1|FQ445168
genomic: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaat ... tttaatgcagCGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
EST: GAGAAGAAAGTGTGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAG CGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGGEST: gi|34362548|gb|CF404133.1|CF404133
genomic: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaat ... tttaatgcagCGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
EST: GAGAAGAAAGTGCAATCAATTCTTGAAGGGCTATGTGACAGCACAAACAG TGCATTTTGGAAATCTGAGGATNACGCAGGAGGGATGGCTGGTCTAGGAGGEST: gi|351013608|gb|FQ429749.1|FQ429749
genomic: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaat ... tttaatgcagCGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
EST: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAG CGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGGEST: gi|110400248|gb|EC966803.1|EC966803
genomic: GAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaat ... tttaatgcagCGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
EST: CAATTCTTGAAGGGCTATGTGACAGCACAAACAG TGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
genomic: CAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaat ... tttaatgcagCGCATTTTGGAAATCTGAGGATGACGCAGGAGGGATGGCTGGTCTAGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGTGTGTTAGCTCCATCCGTTAAAAGTGAGAAGAAAGTGCGATCAATTCTTGAAGGGCTATGTGACAGCACAAACAGgcaagtcaatgatcttggtcactttatggcacatatgatggatgaagctaaacaaccataaatggatagaaattttgagacgaaataatatgatttttaa
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa