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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACTCGACACTCAAGTGGGTCTCATGGCCGAGAAGAAGATCAAGGGTTTTGCCATCAGTGAAACAGCCTTTGTCATATTCATCATCAATGCCTCAAGgtatacacgataagataaaaggaataaagcaggttataaccattaatatatgaaaaactacatggcctgacactgaaaataatgatacactaatcgaaatgagcgttgaacatacag

Basic information

species Vitis vinifera
transcript Vv14s0066g01690.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G04410.1 (Glycine max), 5'ss of exon 9
AAGAACTCGACACTCAAGTGGGTCTCATGGCCGAGAAGAAGATCAAGGGTTTTGCCATCAGTGAAACAGCCTTTGTCATATTCATCATCAATGCCTCAAGgtatacacgataagataaaaggaataaagcaggttataac---cattaatata--tgaaaaactacatggcctgacactgaaaataatgatacactaatcgaaatgagcgttgaacatacag
|||| || ||    |  || || || ||||| |||||||| || ||||||||||| |||||||| ||||| ||||| |||||| |  |||  ||  | ||||| |  | || | |    |  |  |       || ||||   | || ||| |  ||  ||| |  |  || |  |||  |  |||    | |  |  |                       
AAGAGCTTGATGTGCTGGTAGGCCTTATGGCGGAGAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaattaaaacttaaaagcacccttttttctaacttacgtttatacacctgccaaagttgaatgcttcccacaaatcatatcacttctatgttg----------------------

upper sequence: Vv14s0066g01690.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA19G01470.1 (Glycine max), 5'ss of exon 9
AAGAACTCGACACTCAAGTGGGTCTCATGGCCGAGAAGAAGATCAAGGGTTTTGCCATCAGTGAAACAGCCTTTGTCATATTCATCATCAATGCCTCAAGgtatacacgataagataaaaggaataaagcaggttataaccattaatatatgaaaaactacatggcctgacactgaaaataatgata-cactaatcgaa-atgagcgttgaacatacag
|||| || ||    |  || || |||||||| || ||||| || ||||||||||| |||||||| ||||| ||||| |||||| |  |||  ||  | |||||    | ||    |||||| |      |   || ||||   |  | |||  |   || |        |  ||   || ||| ||| || |  | |    | ||| ||          
AAGAGCTTGATGTACTGGTAGGCCTCATGGCGGAAAAGAAAATAAAGGGTTTTGCAATCAGTGAGACAGCTTTTGTTATATTCCTACTCATGGCAACCAGgtaagagcaat----taaaagcacc----ctttttttaactcatgtt-tatatacgccttccaaattgaatgcttccaacaatcatatcagttctaggttgtaagcttt----------