Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTAAGGGTGACATTCAAATTCTGTGTACCACAAATACTCTTGCCCATGGAATCAACCTACCGGCACATACAGTAGTAATCAAATCAACGCAGCACTTgtatgttgaactgtattttgtacttctcagaaattgtaaagatcctctttgtctttagtcatcagctctagtgtttgttcag

Basic information

species Vitis vinifera
transcript Vv14s0066g00880.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G07850.1 (Glycine max), 5'ss of exon 10
TTCTTAAGGGTGACATTCAAATTCTGTGTACCACAAATACTCTTGCCCATGGAATCAACCTACCGGCACATACAGTAGTAATCAAATCAACGCAGCACTTgtatgttgaactgt---atttt----gtacttc-tcagaaattgtaaagatcctctttgtctttagtc--atcagctctagtgtt-tgttcag
|||| ||||||||||||||| | || || || |||||||| || |||||||||||||| || || ||||||||||| || ||||||||||| |||||||||||||||  | | |   |||||    ||||||| |   |   | | || |   | |   | |  |     ||    |  | | || ||  |||
TTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATACACTAGCCCATGGAATCAATCTCCCAGCACATACAGTGGTTATCAAATCAACACAGCACTTgtatgttatattttttaattttttatgtacttcattgtagcatattaaaaaaatatggttttacaacttgatttattgaaatattatggccag

upper sequence: Vv14s0066g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G27730.1 (Arabidopsis thaliana), 5'ss of exon 10
TTCTTAAGGGTGACATTCAAATTCTGTGTACCACAAATACTCTTGCCCATGGAATCAACCTACCGGCACATACAGTAGTAATCAAATCAACGCAGCACTTgtatgttgaactgtattttgtacttctcagaaattgt-aaagatcctctttgtctttagtcatcagctctagtgtttgttcag-----
| || || || || || ||| || | || || || || ||||||||||||||||||||||| || ||||||||||| || || |||||||| || || ||||| ||      |||  |    |   | || | || |   |  | |  ||  | |  ||| ||   ||    | | | |||       
TCCTGAATGGAGATATCCAAGTTATCTGCACGACCAACACTCTTGCCCATGGAATCAACCTGCCTGCACATACAGTGGTCATTAAATCAACTCAACATTTgtacgtctttgagtagatatgcccattaagtatttattggaatttcagttaatttccagtaatatactgacatttcttttccttttag