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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGGAGGATGAGACCATGCCTCCAGGTGATTCTTCCCAACCAGGGTTCCGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacactccgtaatgtctgcttttccttttctacttgggtgtggtacagatatctttgctgtcttgaaatctgagtgcgactttaaaacttgcag

Basic information

species Vitis vinifera
transcript Vv14s0060g01510.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584249|gb|DV221194.1|DV221194
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGTCCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|34551047|gb|CF519245.1|CF519245
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|110423058|gb|EC989393.1|EC989393
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGTCCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|71865774|gb|DT014829.1|DT014829
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGTCCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|110723074|gb|EE099968.1|EE099968
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGTCCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|77583658|gb|DV220860.1|DV220860
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGTCCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|34319522|gb|CF372276.1|CF372276
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGTCCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|110359897|gb|EC922198.1|EC922198
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|34543930|gb|CF512162.1|CF512162
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|34548253|gb|CF516485.1|CF516485
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|110703588|gb|EE080564.1|EE080564
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGTCCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|110721578|gb|EE098736.1|EE098736
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGTCCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|110404262|gb|EC969043.1|EC969043
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA
EST: gi|30132703|gb|CB918042.1|CB918042
EST:     CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAG                         GATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGANAGGGTAAA
genomic: CGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacac ... aaacttgcagGATTTCTAGTTGGTGGTTCATTGTAGACCTAGCTGAGTATGAAAGGGTAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAGGAGGATGAGACCATGCCTCCAGGTGATTCTTCCCAACCAGGGTTCCGCTTTGGTGAGGTTCCTGTTCCCACTGGTGGCTTCAACTTCAGCTAAAGgtgtgtacactccgtaatgtctgcttttccttttctacttgggtgtggtacagatatctttgctgtcttgaaatctgagtgcgactttaaaacttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT