Sequence
atgc intronic sequence ATGC exonic sequenceGTTCCTCACTTGTATTGCATTGGTGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgtaattaccttgtttgttgccactctctctctactacatggtttttgtcattcagttttaatatctacttgaaacctgacttttcttttgtcgacatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 10
GTTCCTCACTTGTATTGCATTGGTGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgtaattaccttgtttgttgccactctctctctactacatggtttttgtcattcagttttaatatctacttgaaacctgacttttcttttgtcgacatag
||||| |||| ||||||||||| ||||| ||||| ||| | ||||||||||||||||| ||||| || ||||||||||||| | | | |||| | | ||| | || | | | | | | | ||| | | ||| | | | ||| | || | |||
GTTCCGAACTTATATTGCATTGGAGATGCCAATGGTAAACTCATGCTTGCTCATGCTGCCAGTGCACAGGGAATCTCTGgtacattgcaaatctgtttagatttcatcttc-ttctatcgctcctatgttgcttatcgtatagttgcctgataagtaa---ttcctatgaaaatgtag
upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 10
GTTCCTCACTTGTATTGCATTGGTGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgtaattacc---ttgtttgttgccactctctctctactacatggtttttgtca--ttcagttttaa-------tatctacttgaaacctgacttttcttttgtcgacatag
||||| | |||||||| ||||| ||||| ||||| ||| | ||||| ||||||||||| ||||| ||||||||||| |||| ||| | |||||| | | | | |||| || | | | || || | ||| | || | |||| | || | || | | || | ||||
GTTCCAAATTTGTATTGTATTGGAGATGCCAATGGCAAACTCATGCTGGCTCATGCTGCCAGTGCACAAGGAATCTCAGgtagatacagaataatttgttcactgttttattgtacttcagcgcatatttcgggttttgctttgaactagtgtagttctttgataactaatttcttgtctg--aatatag
upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G152958_T02 (Zea mays), 5'ss of exon 10
GTTCCTCACTTGTATTGCATTGGTGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgtaatt-accttgtttgttgccactctctctctactacatggtttttgtcattcagttttaatatctacttgaaacctgacttttcttttgtcgacatag
|| || | || ||||||||||| ||||| ||||| || | |||||||| |||||||| ||||| |||||||| || |||| || | | | || | | | | |||| || ||| | | | | || | |||| | | | |
GTACCCAATTTATATTGCATTGGAGATGCCAATGGCAAGCTCATGCTTGCCCATGCTGCCAGTGCACAAGGAATTTCAGgtacttgagagttcctttttcttgtggtttcttggagcatgcttattggtgtacttgtctgatgttgacttcctattcaaatgtag--------------
upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S112_186V6.1 (Physcomitrella patens), 5'ss of exon 10
GTTCCTCACTTGTATTGCATTGGTGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgt-aattaccttgtt-tgttgc-cactctctctctactacat--ggtttttgtcattcagttttaatatctacttgaaacctgacttttcttt-tgtcgacatag-----------------------
|| || || ||||| ||||| |||||||||||||| || ||||||||||||||||| ||||| |||||||| || |||||| ||| | | | |||| | | | | ||||| | | ||| |||| ||| | | | | ||| ||| || |||||| | |
GTACCGCATTTGTACTGCATCGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCCCAAGGCATTTCTGgtgaatcattctactgtgttcctcgaattgaagcatttacattagatccttgccattgttggttattgagtgtcgtactcggcactgttccttatgtcgataaatttgcgttaccttttcatgaacag
upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S352_68V6.1 (Physcomitrella patens), 5'ss of exon 10
GTTCCTCACTTGTATTGCATTGGTGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgta-attaccttgtttgttgccactctc------tctctact-acatggtttttgtcattcagttttaatatc----tacttgaaacctgacttttcttttgtcgacatag-----------------------------------------------------------
||||| | | ||||| |||||||| || ||||| ||||||||| | || ||||| || ||||||||||| |||||||||| | | | | | | || | | || | | || || ||| || | | ||| | ||| ||| || | || || || |
GTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCACATGCAGCTAGTGCCCAAGGCATCTCTGgtatgtcaattggctctaagacaaataaatgaagtatttatttatatatttattgatttttatcctcaatgctccaatgcttcaaagctattcgatggttccacgcaattgataaattttatgatattttagtttgaagtccttaccgagttaatgactttcttttacag
upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S35_94V6.1 (Physcomitrella patens), 5'ss of exon 10
GTTCCTCACTTGTATTGCATTGGTGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgtaatt------accttgtttgttgccactctctctctactacatggtttttgtcatt----------cagttttaatatctacttgaaacctgacttttctt--ttgtcgacatag------------------------------
|| || |||||||||||||| || ||||||||||| || ||||||||||||||||| ||||| || ||||| || || ||| | ||| |||| | | | | | ||| | | || | |||| ||||| | || | || || ||| || || |||||
GTACCACACTTGTATTGCATCGGCGATGCAAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcatacgaccctgttcctcgggattgaagcgctaacattggattcataacattatattcatatttattttattgattatgggcaatctcactcgtcccagtttctcacataaaatcgatatgcgttggttttttatgaacag
upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ06739 (Selaginella moellendorffii), 5'ss of exon 10
GTTCCTCACTTGTATTGCATTGGTGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgtaattaccttgtttgttgccactctctctctactacatggtttttgtcattcagttttaatatctacttgaaacctgacttttcttttgtcgacatag
|| ||||| ||||| ||||| || ||||||||||| ||| ||||||||||||| ||||| ||||| || || || || |||||| | | || | | | | || | || | ||| |
GTACCTCATTTGTACTGCATCGGCGATGCAAATGGCAAACTGATGCTTGCTCACGCTGCCAGTGCTCAGGGCATTTCAGgtaatc------tcgagagagacatgttttgtgtgatgtgaccgtgatcgtgtctcttttgcag-----------------------------------
upper sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ16882 (Selaginella moellendorffii), 5'ss of exon 10
GTTCCTCACTTGTATTGCATTGGTGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgtaattaccttgtttgttgccactctctctctactacatggtttttgtcattcagttttaatatctacttgaaacctgacttttcttttgtcgacatag
|| ||||| ||||| ||||| || ||||||||||| ||| ||||||||||||| ||||| ||||| || || || || |||||| | | || | | || | || | || | ||| |
GTACCTCATTTGTACTGCATCGGCGATGCAAATGGCAAACTGATGCTTGCTCACGCTGCCAGTGCTCAGGGCATTTCAGgtaatc------tcgagagaaacatgttttgtatgatgtgaccgtgatcgtgtctcttttgcag-----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110371471|gb|EC935522.1|EC935522EST: AAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTG TTGTTGAACAAATTAGTGGAAAGGACAATGTGCTGAATCATTTGAGCATCC
genomic: AAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgtaattacct ... gtcgacatagTTGTTGAACAAATTAGTGGAAAGGACAATGTGCTGAATCATTTGAGCATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCCTCACTTGTATTGCATTGGTGATGCAAATGGAAAAATGATGCTTGCTCATGCTGCAAGTGCCCAAGGAATCTCTGgtaattaccttgtttgttgccactctctctctactacatggtttttgtcattcagttttaatatctacttgaaacctgacttttcttttgtcgacatag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA