Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccag

Basic information

species Vitis vinifera
transcript Vv14s0060g00600.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G28530.2 (Glycine max), 5'ss of exon 10
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccag-----------------------------------------
||| ||||||||||||||||||| || ||||| ||||||||||| || |||||||| || |||||||| || |||||||| || |||||||||||||||  | |||| ||  |||  |||| |   | ||  |||| | | || ||||||       |||||   | |||||| |||                                             
GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaatttaatagcatttcatgctttcttct-taagctcatcatattaacgcatttaa--aaatccttattgaacacactatactaaaatatattcactgattttcttctctactag

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G22600.1 (Glycine max), 5'ss of exon 10
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcatat-atagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccag--------------------------------------
||| ||||||||||||||||||| || ||||| ||||||||||| || |||||||| || |||||||| || |||||||| || ||||||||||||||   | |||| ||  |||  |||| | | | ||| ||  |   | || ||||||  ||  | | | |  | |||||| |||                                          
GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtttcacaaataaatttaatagcatgtcacactttattgtta--agctcatcata--ttaatgtatttcaaaatccttattgaacacactatactaacatatttgctgatttttcttctactag

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA19G41420.3 (Glycine max), 5'ss of exon 10
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaa---agtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcat--atccttgttgccag----------------------------------------
||| |||| |||||||||||||| || || || |||||||| || ||||||||||| || |||||||| || |||||||| || |||||||||||||||  | |||| ||   | |||       | |  | |  |    ||| | ||    ||||  | || |||  |   ||   | |||                                            
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGgtatcacaaataaatttaataacctttcgtgttttatactctattcaccatagtgaaaatactaatatatctagtaatttgtcttgtttagtgcaccacactgataaatttgttgatttggtccttctag

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G38850.2 (Glycine max), 5'ss of exon 10
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcat---atatagtttgtttctctcatcttatcataaatttttatttattcatatccttg--ttgccag----------------------------------------
||| |||| |||||||||||||| || || || |||||||| || ||||| || || || |||||||| || |||||||| || |||||||||||||||  | |||| ||  |||  || |    | |  | |  ||   ||| | ||    ||||  | || |||  |    ||||  |||                                            
GTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAGgtatcacaaataaatttaatagcctttcgtgttttatactttattcaccatagtgaaaatactaatatatctagtaacttgtcttgtttagcgcaccacactgataaatttgttgatttggtccttctag

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgca-----tatatagtttgtttctctcatcttatc-ataaatttttatttat--tcatatccttgt-tgccag--------
|| ||||| || || ||  | ||||| || || |||||||| || ||||| || |||||||| || || ||||| || ||||||||||||||||| |||   |   ||   || ||||||     |  ||  |  | ||   |  | |  || | || |    || ||    | | |  | || ||  ||        
GTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAAgtat--gtggtctgtgtgaatgcactgttttcatcttgggctttggtagtgtagtccagaagtggagatgtacgaccgtgttttcgtgtgtgagcggtgggt

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagta--aatg--catatatagtttgtttctctcatcttatcataaatttttat------ttattcatatccttgttgccag-----
|| ||||| || || ||| | ||||| || || |||||||| || ||||| || |||||||| || || |||||||| ||||| || |||||||||||||      ||   ||   | ||  |   ||| ||   ||       |  | | | |  |  ||        |||    ||| | |  |  | |     
GTGTTGGGGACACCCACACGCGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCATCCTTGGCACAAGgtacggctggtctgtgtgttagtggtctggtatggtgctttggagatgtactgtaacagttgattggaaagcgttacctgtattcataataacggtgatt

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 5'ss of exon 9
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccag------------------------------------------------------------------------------------------------------------
|| || || || || ||| | ||||| || || |||||||| || ||||| || |||||||| || || |||||||| |||||||| ||||||||||||       |     |   |   ||  || |||   |     ||  ||| ||    |   | |||| | | |||| | |    |                                                                                                            
GTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAGgtatggtttgtatgtttgggt---tagctatttttagtggtctattatataatttgataggaattatccgtgtcctcgatattggtgattttgaatttggttggttggacgctgctactcgttgtgattgggagaatggagcgtgttgcattgaccttagcaacgtgcgaattgattggttctgtggtggcag

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccag
|| || || ||||| ||  |||||||||| ||||||||||| || ||||| || ||||| || ||||| || |||||||| || || ||||||||||||  || |||||             |   || | | ||||||    | ||      | |   |  || | |             
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatca-------------tccggtatatctctctctctgtctctcttgatgtggctcgttgacag------------

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccag
|| || || ||||| ||  | |||||||| ||||||||||| || ||||| || ||||| || ||||| || |||||||| || || ||||||||||||  || |||||             |   || | | ||||||    | ||      | |   |  || | |             
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgtaagagcaatca-------------tccggtatatctctctctctgtctctcttgatgtggctcgttgacag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579904|gb|CB002599.1|CB002599
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|34546629|gb|CF514861.1|CF514861
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAATGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|156737184|gb|EV241305.1|EV241305
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTTCA-GACT
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTT-CAAGACT
EST: gi|22008977|gb|BQ794011.1|BQ794011
EST:     CAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: CAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|30253239|gb|CB970790.1|CB970790
EST:     CTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTCGGTTTCAAGACTA
genomic: CTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|34546808|gb|CF515040.1|CF515040
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAATGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110700433|gb|EE078469.1|EE078469
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110399980|gb|EC966516.1|EC966516
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|30129168|gb|CB914507.1|CB914507
EST:     CCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: CCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|30131217|gb|CB916556.1|CB916556
EST:     CCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: CCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|349828876|gb|FQ419209.1|FQ419209
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|30134321|gb|CB919659.1|CB919659
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|87584334|gb|DY473544.1|DY473544
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110424518|gb|EC990881.1|EC990881
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110367470|gb|EC931404.1|EC931404
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110416992|gb|EC983012.1|EC983012
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110423991|gb|EC990344.1|EC990344
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|30302437|gb|CB979231.1|CB979231
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|22014270|gb|BQ799304.1|BQ799304
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110424369|gb|EC990727.1|EC990727
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|34543640|gb|CF511872.1|CF511872
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110371622|gb|EC935735.1|EC935735
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|30136122|gb|CB921460.1|CB921460
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110408420|gb|EC974056.1|EC974056
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|352789914|gb|FQ478729.1|FQ478729
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|22014271|gb|BQ799305.1|BQ799305
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAG
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAG
EST: gi|156737183|gb|EV241304.1|EV241304
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|32245847|gb|CD711666.1|CD711666
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110694879|gb|EE072256.1|EE072256
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|34543715|gb|CF511947.1|CF511947
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|34547238|gb|CF515470.1|CF515470
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|37187368|gb|CF606721.1|CF606721
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|33404123|gb|CF209750.1|CF209750
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110729460|gb|EE105432.1|EE105432
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|110386931|gb|EC951566.1|EC951566
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|30129063|gb|CB914402.1|CB914402
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
EST: gi|27582365|gb|CB005060.1|CB005060
EST:     ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG                         ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA
genomic: ACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaa ... ttgttgccagATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAGgtactagaaatcaaagtaaatgcatatatagtttgtttctctcatcttatcataaatttttatttattcatatccttgttgccag

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