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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTAGAGTTGTGCTCCACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaattgcacactgaactccacttcctgccccattctttcccataaatctgacacttgctctaatgtggcag

Basic information

species Vitis vinifera
transcript Vv14s0036g00520.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0036g00520.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G30880.3 (Glycine max), 5'ss of exon 9
GATTAGAGTTGTGCTCCACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatga--attgcaca----ctgaactccactt-cctgccccattcttt-cccataaatctgacacttgctctaatgtggcag---------------------------------------------------------
 || |||||||| ||||||||||||||||||| || ||||||||| ||| ||||||| ||| ||||||||||||  | | || |    || |||||   ||   ||    ||    |   |||   | |     ||  | |  |  | | |                                                         
AATGAGAGTTGTTCTCCACCACCAAATATCAGCAAGTGATGTGCAATATGCATTGTCGTGCTTTCAGgtgatgatgactacaaatcaactaaactctttttgtttgatgtatctaatatgcattgttttttttttttttttccttcgtctggcatatgtttttgactgaatgctataagatgaaacttgcttttgttacatgttgcag

upper sequence: Vv14s0036g00520.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G36590.2 (Glycine max), 5'ss of exon 9
GATTAGAGTTGTGCTCCACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatg--aattgcacactgaactc-cacttcctgccccat-tctttcccataaatctgacacttgctctaatgtggcag--------------------------------------------------------
 || |||||||| ||||| ||||||||||||| || ||||||||| ||  | ||||||||| |||||||||||   | | || |   |     | |||  ||  | || | |     ||  || |    | | ||   |  ||| |                                                         
AATGAGAGTTGTTCTCCATCACCAAATATCAGCAAGTGATGTGCAATACGCCTTGTCATGCTTTCAGgtgatgttgactacaaatcaattaaactcttattgttcaatgtatccaatatgcatttttttcctccttcgac-tggtatatatttttttaccgaatactatataagatgaaacttgcttttgttacatgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30300481|gb|CB977275.1|CB977275
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|110379523|gb|EC944723.1|EC944723
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|30323423|gb|CD006685.1|CD006685
EST:     GATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: GATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|110727225|gb|EE103744.1|EE103744
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|110362584|gb|EC926127.1|EC926127
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|30130413|gb|CB915752.1|CB915752
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|46918393|gb|CN547722.1|CN547722
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
EST: gi|110422750|gb|EC989080.1|EC989080
EST:     ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAG                         CAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT
genomic: ACCACCAAATATCAGGAACTGATGTGCAGTATACATTGTCATGCATTCAGgtgatgaatt ... aatgtggcagCAAGCTGTAACTGGAGTCCATGATTGCAACGGCGACTTGAAAGAAATTTCT