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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGGATGCAGAAGATTTACTTACTGGGAATTATACAATTGATGATGTTGTCCTTCCTTTGCCTGGgtaaggatgacctacaaaatttagttgcttttatttcataaagaccattttttgcttttctctctcttctaacactgttattttgacag

Basic information

species Vitis vinifera
transcript Vv14s0030g01850.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01850.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os05g43374.2 (Oryza sativa), 5'ss of exon 8
GCTCTGGATGCAGAAGATTTACTTACTGGGAATTATACAATTGATGATGTTGTCCTTCCTTTGCCTGGgtaaggatgac-ctacaaaatttagttgcttttatttcataaagaccattttttgcttttctctctcttctaacactgttattttgacag
    | ||| | ||||||||| | |  ||    || ||| |||| ||||||||||||||||||||||||||   |  |  | |||    | | ||   |||   |  | ||   ||||      | |      | | || |      ||      |||
ATAGTTGATTCTGAAGATTTATTGAAGGGTGTCTACACATTTGAAGATGTTGTCCTTCCTTTGCCTGGgtatttaccattccacatccataacttcaattttcatattgaatcacattgagaaatatatatggtgtgcttatttctgtaaacatgcag

upper sequence: Vv14s0030g01850.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G096553_T02 (Zea mays), 5'ss of exon 14
GCTCTGGATGCAGAAGATTTACTTACTGGGAATTATACAATTGATGATGTTGTCCTTCCTTTGCCTGGgtaaggatgacctacaaaatttagttgcttttatttcataaagaccattttttgcttttctctctcttctaacactgttattttgacag
    | ||| | | ||||||   ||  ||||  || ||  |||||||||||||||| |||||||||||||||     |    |     || ||  |||| ||||  |    |   || ||||  |  |   |                         
ATAGTTGATTCTGGAGATTTTACTAAGGGGATATACACTTTTGATGATGTTGTCCTACCTTTGCCTGGgtaatatctattcccttctatttgt-actttcattttttgtttatgcttatttgtatggcatgcag-----------------------