Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTTGATAATATTTATAAACTAGTTGGGGTGCCAGTTGTCACAGTGCAACTTAGATACAATGGCTGGGTCACAGAGTTACAGGATCTAGAACGGTCAAGgtgatcctctcatctaaagtgtagtcactggcttatgaaattgaatgctcttgccttagctttgaagagcaaggattaagatttccttttgtttgtaccttatgtggctaattgttaagaattttatattcctgttcttcattaatcctttgcaagttggttactgaaaattccacattgggactggtag

Basic information

species Vitis vinifera
transcript Vv14s0030g01740.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G37170.1 (Glycine max), 5'ss of exon 10
TTTTTGATAATATTTATAAACTAGTTGGGGTGCCAGTTGTCACAGTGCAACTTAGATACAATGGCTGGGTCACAGAGTTACAGGATCTAGAACGGTCAAGgtgatcctctca-tctaaagtgtagtcactggcttatgaaattgaatgctcttgccttagctttgaagagcaaggattaagatttccttttgtttgtaccttatgtggctaattgttaagaattttatattcctgttcttcattaatcctttgcaagttggttactgaaaattccacattgggactggtag
||||  |||| || ||| |||||||||| || || || |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||  |||||||| |  |||| | | | | ||  |   |    || || || |    | || |||| ||  |  | ||||     |||   ||||| | |||| |  |   || |    ||  |  | | | |   |   |  |||     ||                                                 
TTTTCAATAACATATATGAACTAGTTGGAGTTCCTGTAGTCACAGTGCAACTTAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaagtctctgaattttaggtccatgtagaaact-ataaagtgatgtacttttgctttgacagtaaagatt---gatc--gattttcctttgatcat-tattgttcaact--tcttcatgcacccttactatctgaatgacag------------------------------------------------

upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G30220.1 (Glycine max), 5'ss of exon 10
TTTTTGATAATATTTATAAACTAGTTGGGGTGCCAGTTGTCACAGTGCAACTTAGATACAATGGCTGGGTCACAGAGTTACAGGATCTAGAACGGTCAAGgtgatcctctca--tctaaagtgtagtcactggcttatgaaattgaatgctcttgccttagctttgaagagcaaggattaagatttccttttgtttgtaccttatgtggctaattgttaagaattttatattcctgttcttcattaatcctttgcaagttggttactgaaaattccacattgggactggtag
||||  ||||||| ||| |||||||||| || || || |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||  |||||||| || |||| |  | ||  ||  |   |    || || || |    | || |||| ||  |       ||  | |||| |  | ||||||  |   ||  || |    ||  |  | | | |   |   |  |||     ||                                                 
TTTTCAATAATATCTATGAACTAGTTGGAGTTCCTGTAGTCACAGTGCAACTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAAGTCAAGgtaattctctgaattttagggtccatgtagaaact-ataaagtgatgtacttttgctttgac-------agttaagattgatctatcctttgatcatta--ttgttcaact--tcttcatgcacccttactatctggatgacag------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965914|gb|GW839253.1|GW839253
EST:     CTTAGATGCAATGGCTGGGTCACAGAGTTACAGGATCTAGAACGGTCAAG                         GCAATTGAGAAAAGCTGCAGGGTTGGATAATCTCCTTTACACCCCAGACGC
genomic: CTTAGATACAATGGCTGGGTCACAGAGTTACAGGATCTAGAACGGTCAAGgtgatcctct ... ggactggtagGCAATTGAGAAAAGCTGCAGGGTTGGATAATCTCCTTTACACCCCAGACGC