Sequence
atgc intronic sequence ATGC exonic sequenceAGGACGTAACCCTCAAAAGGTTTTTCAGAGAGGCGGTTCATTCTTGGCTGGAAACTTGTCCTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCAACCCCTgtaagtcattcttattcctgtctgttctgtaattcataaaagatgttaatgtgtatactgaatccttattgtgcataataatatgaatagtaggcatcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os12g06810.4 (Oryza sativa), 5'ss of exon 10
AGGACGTAACCCTCAAAAGGTTTTTCAGAGAGGCGGTTCATTCTTGGCTGGAAACTTGTCCTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCAACCCCTgtaagtcattcttattcctgtctgttctgtaattcataaaagatgttaatgtgtatactgaatccttattg-tgcataataatatgaatagtaggcatcct----
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AGCGCATGAACCCCTAAAGCTTTTCCAAAAAGGTTCTTCATTCTTAGCTGGCAATTTGTCATTCTCCAGGGCAAGGGCTTCTTTAGAAGGATCAGCACCTgtaag-catgacatttgccatctttcattaattgtatcatgaacaataattt-tgtatt---tcttcgcagacacacttttaagtcagtaataacagtttcacat
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G40360.1 (Glycine max), 5'ss of exon 10
AGGACGTAACCCTCAAAAGGTTTTTCAGAGAGGCGGTTCATTCTTGGCTGGAAACTTGTCCTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCAACCCCTgtaagtcattcttattcctgtctgttctgtaattcataaaagatgttaatgt-gtatactgaatccttattgtgcataataatatgaatagtaggcatcct
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AGGATACGACCCACAAAAGATTTTCCAGAGAGGCAATTCTTTTTTAGCTGGAAACTTGTCCTTTTCAAGAGCAAGAGTGTCAATAGAAGGATCTACCCCTgtatgttatgtttatttctgaaaaaaaaatcactatattactttcctattattatatcttcaattatttatgttgctcttcgttctcataattccagttg-
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA19G43070.1 (Glycine max), 5'ss of exon 10
AGGACGTAACCCTCAAAAGGTTTTTCAGAGAGGCGGTTCATTCTTGGCTGGAAACTTGTCCTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCAACCCCTgtaagtcattcttattcctgtctgttctgtaattcataaaagatgttaatgtgtatactgaatccttattgtgcataataatatgaatagtaggcatcct
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AGGATGCGACCCTCAAAAGATTTTCCAGAGAGGCAATTCTTTTTTAGCTGGAAACTTGTCTTTTTCAAGAGCAAGAGTTTCACCAGAAGGATCTACCCCTgtatgttatatttaattctgaaaaaaaaatcctacattacttttctattattatatcttcaaatttttatgttgctcttggtatttataataccagttgc
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA19G42990.1 (Glycine max), 5'ss of exon 10
AGGACGTAACCCTCAAAAGGTTTTTCAGAGAGGCGGTTCATTCTTGGCTGGAAACTTGTCCTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCAACCCCTgtaagtcattcttattcctgtctgttctgtaattcataaaaga--tgttaatgtgtatactgaatccttattgtgcataataatatgaatagtaggcatcct
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AGGATACGACCCACAAAAGATTTTCCAGAGAGGCAATTCTTTTTTAGCTGGAAACTTGTCCTTTTCGAGAGCAAGAGTGTCAATAGAAGGATCTACCCCTgtatgttatatttatttctgaaaaaaaatcgctatattactttcctattattatatcttcaaattttatgttgctcttcgttctcgtaataccagttgct--
upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G40440.4 (Glycine max), 5'ss of exon 10
AGGACGTAACCCTCAAAAGGTTTTTCAGAGAGGCGGTTCATTCTTGGCTGGAAACTTGTCCTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCAACCCCTgtaagtcattcttattcctgtctgttctgtaattcataaaagatgttaatgtgtatactgaatccttattgtgcataataatatgaatagtaggcatcct-
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AGGATGCAACCCTCAAAAGATTTTCCTGAGAGGCAATTCTTTTTTAGCTGGAAACTTATCCTTTTCAAGAGCAAGAGTGTCACTAGAAGGATCTACTCCTgtatgttatatttatgtctgaaaaaaat-tgctatattacttttctgttattatatcttaaattttttatgttcctcttggtattgatatcttttattagtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71881516|gb|DT030571.1|DT030571EST: GAAACTTGTCCTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCAACCCCT GTTCCTGTTCACAAGGAACCATCCTTTACCATTCCTGGAACCCCAGGAATT
genomic: GAAACTTGTCCTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCAACCCCTgtaagtcatt ... aatgttgtagGTTCCTGTTCACAAGGAACCATCCTTTACCATTCCTGGAACCCCAGGAATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGACGTAACCCTCAAAAGGTTTTTCAGAGAGGCGGTTCATTCTTGGCTGGAAACTTGTCCTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCAACCCCTgtaagtcattcttattcctgtctgttctgtaattcataaaagatgttaatgtgtatactgaatccttattgtgcataataatatgaatagtaggcatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaga