1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAAAGCTTTTGCAGATGCGCTTGAAGGCGTAGGTGCTGAAGCTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAAgtaagagatgattggttatattctttcctttttctgttgttgttcaaaaagtttaaaaaagaaaaaaagaaaaaaagaaaaagaaaaaataagtaattta...
species | Vitis vinifera |
transcript | Vv14s0006g00430.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAA GACCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTCEST: gi|110714548|gb|EE091581.1|EE091581
genomic: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAAgtaagagatg ... ttctgtgcagGATCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTC
EST: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAA GATCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTCEST: gi|30330044|gb|CD013306.1|CD013306
genomic: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAAgtaagagatg ... ttctgtgcagGATCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTC
EST: CTAAACTTATTTTATATGAAGGAAAAACTCATGCAGATTTATTTCTTCAA GACCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTCEST: gi|83275657|gb|DV939665.1|DV939665
genomic: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAAgtaagagatg ... ttctgtgcagGATCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTC
EST: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAA GACCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTCEST: gi|110411087|gb|EC976788.1|EC976788
genomic: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAAgtaagagatg ... ttctgtgcagGATCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTC
EST: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAA GATCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTCEST: gi|27582217|gb|CB004912.1|CB004912
genomic: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAAgtaagagatg ... ttctgtgcagGATCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTC
EST: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAA GACCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTCEST: gi|30328980|gb|CD012242.1|CD012242
genomic: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAAgtaagagatg ... ttctgtgcagGATCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTC
EST: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAA GACCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTCEST: gi|34364287|gb|CF405872.1|CF405872
genomic: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAAgtaagagatg ... ttctgtgcagGATCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTC
EST: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAA GACCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTC
genomic: CTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAAgtaagagatg ... ttctgtgcagGATCCTCTGAGAGGTGGTAAAGATGAGCTGATTGACTATGTGGTTGCTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAAGCTTTTGCAGATGCGCTTGAAGGCGTAGGTGCTGAAGCTGAACTTATTTTATATGAAGGAAAAACTCATACAGATTTATTTCTTCAAgtaagagatgattggttatattctttcctttttctgttgttgttcaaaaagtttaaaaaagaaaaaaagaaaaaaagaaaaagaaaaaataagtaattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat