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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAGAGTGAATTTCAGAAGGCATATGAGAAGGGGATTCCAAAATCAAAgtaggattcttttttgcagtcatgtttacacaacttgattatctatcaattatgcaagcacttaaatgtgatgatgttttcag

Basic information

species Vitis vinifera
transcript Vv13s0156g00180.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ25084 (Selaginella moellendorffii), 5'ss of exon 9
GTTCAGAGTGAATTTCAGAAGGCATATGAGAAGGGGATTCCAAAATCAAAgtaggattcttttttgcagtcatgtttacacaacttgattatctatcaattatgcaagcacttaaatgtgatgatgttttcag
    | || || ||||||||||| ||||||||||| ||||  ||||||||||  |     |  | | ||| || | ||     | |||| ||  | |  |    | ||                         
ACCGACAGCGAGTTTCAGAAGGCGTATGAGAAGGGAATTCACAAATCAAAgtgag-----tagtcgtagttatatatat---tcctgataattgagcggtgtgtctag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718322|gb|FC064764.1|FC064764
EST:     GTTCAGAGTGAATTTCAGAAGGCATATGAGAAGGGGATTCCAAAATCAAA                         GTACTGGGAGCCA-CATATGAGGATTCTCTTAGTTTGATTGCTCA-GTAC-
genomic: GTTCAGAGTGAATTTCAGAAGGCATATGAGAAGGGGATTCCAAAATCAAAgtaggattct ... atgttttcagGTACTGGGAGCCAACATATGAGGATTCTCTTAGTTTGATTGCTCAAGTACC