Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTCTTGCTTTCTATGTCATTAATGATCTGCAAATGTCACAATCATCTAAAGCTTTGgtacttatacaaacctttccaccatcaaatttatcccaattgtgtataaccatttcaagaatcatgcaaaactgattatcttgtttaattgatgtgagtag

Basic information

species Vitis vinifera
transcript Vv13s0156g00080.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os07g39010.2 (Oryza sativa), 5'ss of exon 9
GCATTTCTTGCTTTCTATGTCATTAATGATCTGCAAATGTCACAATCATCTAAAGCTTTGgta-----cttatacaaacctttccaccatcaaatttatcccaattgtgtataaccatttcaagaatcatgcaaaactgattatcttgtttaattgatgtgagtag-
||| ||||||||||||| ||||| |||||| || ||||| |||||||||| ||||| ||||||     ||| | || |  ||| |    | ||  || |   | ||      |   || ||| | || |  | |    | |  | |||  ||  | ||  |  | | 
GCACTTCTTGCTTTCTACGTCATAAATGATTTGGAAATGCCACAATCATCCAAAGCATTGgtaaggttctttttcatatatttgctttgtaaatgttgttttattta-----atttatctcatgtattacactag--cgctggtgttgaatatgtcattgggatggt

upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G42210.1 (Glycine max), 5'ss of exon 9
GCATTTCTTGCTTTCTATGTCATTAATGATCTGCAAATGTCACAATCATCTAAAGCTTTGgtacttatacaaacctttccaccatcaaatttatc-----ccaattgtgtataaccatttcaa-----gaatcatg-caaaactgattatcttgtttaat--tgatgtgagtag
||||  |||||||||| |||||| ||||| || |||||| | |||||| | ||||||||||||||  ||||||  ||  |    | || || ||       || ||   | |||  | ||  |     |||| |||  |   |||||||   ||  | |   || |     |||
GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtactc-tacaaattttgtccattttaatttcattgtagatcatttagctttaaataatttgaagtttgaataatggtattgctgattacactgcctgacgatgtttgacatag

upper sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G16870.4 (Glycine max), 5'ss of exon 6
GCATTTCTTGCTTTCTATGTCATTAATGATCTGCAAATGTCACAATCATCTAAAGCTTTGgtacttatacaaacctttccaccatcaaatttatcccaatt------gtgtataaccatttcaag----aatcatg-caaaactgattatcttgtttaat--tgatgtgagtag
||||  |||||||||| |||||| ||||| || |||||| | |||||| | |||||||||||| |  ||||||  ||  |    | || || ||   | ||      |  |  ||  |||| |||    ||| ||| ||   |||||||   ||  | ||  || | |   |||
GCATACCTTGCTTTCTTTGTCATCAATGACCTACAAATGGCCCAATCAGCCAAAGCTTTGgtaatc-tacaaattttgtccattttaagttcattgtagttcatttagcttcaaataatttgaagtttgaatgatggcatggctgattacactgcctgatgatgttttacatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29784536|gb|CB345387.2|CB345387
EST:     TTAATGATCTGC-AATGTCACAATCATCTAAAGCTTTG                         GTTCCTGCAATCATCTACATTTGCAGCTTCATCGTATCTATCATTTTACAG
genomic: TTAATGATCTGCAAATGTCACAATCATCTAAAGCTTTGgtacttatac ... atgtgagtagGTTCCTGCAATCATCTACATTTGCAGCTTCATCGTATCTATCATTTTACAG