Sequence
atgc intronic sequence ATGC exonic sequenceCGGCAAGACAAAATGATGGGAATAGTGGTGCCACGTCATCTTCTGAAGCACCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATGgtattggtttgacatctttaacttggtgcctggcattgaccttcttactgtttgaaaacaacaatatctttcttcaacattgagttctctctgctgtgaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 9
---CGGCAAGACAAAATGATGGGAATAGTGGTGCCACGTCATCTTCTGAAGCACCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATGgtattggtttgacatctttaacttggtgcctggcattg-accttcttactgtttgaaaacaacaatatctttcttcaacattgagttctctctgctgtgaa--
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GTTCTGCAGCTTCGGTTAGACAACCTGACGGTGCTAC---ATCTTCTGAGGGGACTGGTCACATAACTAGGCTAGCTTCAATTGATTCCTTCGATTCAAAATGgttt--gcaaagcttccttttttattagtatgattttgcatctaatcatattctagtgatgggca-attggtataatgtgttcacttcaaagaactgtatgga
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 9
---CGGCAAGACAAAATGATGGGAATAGTGGTGCCACGTCATCTTCTGAAGCACCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATGgtattggtttgacatctttaacttggtgcctggcattgaccttcttactgtttgaaaacaacaatatctttcttcaacattgagttctctctgctgtgaa-
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GTTCTGCAGCTTCGGTTAGACAACCTGATGGTGCTAC---ATCTTCCGAGGGGACCGGTCACATAACTAGGCTAGCTTCAATTGATTCCTTCGATTCAAAATGgtgt-gtacaaaccttccttttttggttagtttaattttgcatccaatcatgttcacttcaaagaactgtatggatttgtttatctttttgggatacacaa
upper sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G04510.1 (Arabidopsis thaliana), 5'ss of exon 9
CGGCAAGACAAAATGATGGGAATAGTGGTGCCACGTCATCTTCTGAAGCACCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATGgtattggtttgacatctttaacttggtgcctggcattgaccttctt--actgtttgaaaacaacaatatctttcttcaacattgagttctctctgctgtgaa--------------
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TAGCCACACAGAACGAGGGGCACAGTGCTCCTCCTACATCTTCTGAATCATCGGGTTCCATAACTCGACTTGCTTCAATAGACTCTTTTGATTCAAGATGgtgggggcatttaagcttcatttgttttctgggcagcaaccttgttcaaagctcctaaaactatacttcagttagacaatctgctaatttttttcttgtgaatatttgataaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32458567|gb|CD799741.1|CD799741EST: CCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATG GCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAA
genomic: CCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATGgtattggttt ... atattcacagGCAACAATTTTTAGAGCAGGGGGAATCAGTTCTTATGATTTCCATGGTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGGCAAGACAAAATGATGGGAATAGTGGTGCCACGTCATCTTCTGAAGCACCTGGTTCTGTAACTAGGCTTGCTTCAATAGATTCCTTTGATTCAAAATGgtattggtttgacatctttaacttggtgcctggcattgaccttcttactgtttgaaaacaacaatatctttcttcaacattgagttctctctgctgtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctgc