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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAGTGGTGTCCCTCCAGGAACCAAGCCTGAAACATGCAAGCGATGTAGAGGTTCAGGCATGgtcagttttcttaggagcatatgtctaatgatttccacacaatattttttctctcttatcaaaaaagaaaaaggttctccatagctaatttttaattttgctgcatctccag

Basic information

species Vitis vinifera
transcript Vv13s0064g01360.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32271787|gb|CD720946.1|CD720946
EST:     GTAGAGGTTCAGGCATG                         ATGTTCATGCAAAATGGCCCATTTAGATTGCAATCTACCTGTACTCATTGT
genomic: GTAGAGGTTCAGGCATGgtcagttttc ... gcatctccagATGTTCATGCAAAATGGCCCATTTAGATTGCAATCTACCTGTACTCATTGT
EST: gi|32267592|gb|CD716555.1|CD716555
EST:     GTAGAGGTTCAGGCATG                         ATGTTCATGCAAAATGGCCCATTTAGATTGCAATCTACCTGTACTCATTGT
genomic: GTAGAGGTTCAGGCATGgtcagttttc ... gcatctccagATGTTCATGCAAAATGGCCCATTTAGATTGCAATCTACCTGTACTCATTGT
EST: gi|32248657|gb|CD714476.1|CD714476
EST:     GTAGAGGTTCAGGCATG                         ATGTTCATGCAAAATGGCCCATTTAGATTGCAATCTACCTGTACTCATTGT
genomic: GTAGAGGTTCAGGCATGgtcagttttc ... gcatctccagATGTTCATGCAAAATGGCCCATTTAGATTGCAATCTACCTGTACTCATTGT
EST: gi|32272152|gb|CD721311.1|CD721311
EST:     GTAGAGGTTCAGGCATG                         ATGTTCATGCAAAATGGCCCATTTAGATTGCAATCTACCTGTACTCATTGT
genomic: GTAGAGGTTCAGGCATGgtcagttttc ... gcatctccagATGTTCATGCAAAATGGCCCATTTAGATTGCAATCTACCTGTACTCATTGT
EST: gi|32268945|gb|CD718104.1|CD718104
EST:     GTAGAGGTTCAGGCATG                         ATGTTCATGCAAAATGGCCCATTTAGATTGCAATCTACCTGTACTCATTGT
genomic: GTAGAGGTTCAGGCATGgtcagttttc ... gcatctccagATGTTCATGCAAAATGGCCCATTTAGATTGCAATCTACCTGTACTCATTGT