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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCTTGCCAGCACCATTATTGGCATGGCACAGGACTTTGTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTGGAACTCGTCATCAGgtgactcaaacaagttctgcttcttctacccccatgcatcattttaactgttattcttaccatgttatgtttttaactttgttttag

Basic information

species Vitis vinifera
transcript Vv13s0064g00560.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G11610.1 (Glycine max), 5'ss of exon 10
GAGTCTTGCCAGCACCATTATTGGCATGGCACAGGACTTTGTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTGGAACTCGTCATCAGgtgactcaaacaagt-tctgcttcttctacccccatgcatcattttaactgttattcttaccatgttatgtttttaactttgttttag
 ||||| || ||||| ||||||   ||||||||||| |||||||| ||||||||||| || ||||||  |||||| ||||||||||| |||||| | | |||||     |   || | |     ||  |     |  |  | |  |||||  |||||  | | ||| ||    ||    || ||  ||
AAGTCTAGCTAGCACAATTATTAATATGGCACAGGATTTTGTGGGTAGCAACAACATCAATCTTCTTAAACCAAACGGTCAATTTGGTACTCGTAACCTGgtgagatggatctgtatatatgattttgatttaaaacctgcttcgtaacttgtattc--atcgtgtaat----ttgctctttttacag

upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G43170.1 (Glycine max), 5'ss of exon 10
GAGTCTTGCCAGCACCATTATTGGCATGGCACAGGACTTTGTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTGGAACTCGTCATCAGgtgactcaaacaagt-tctgcttcttctacccccatgcatcattttaactgttattcttaccatgttatgt------ttttaactttgt--tttag-----------
 ||||| || || || ||||||   ||||||||||| |||||||| ||||||||||| || ||||||   ||||| || |||||||| |||||| |   |||||    ||   || | |     ||  | |  |||  ||| || | | | | ||||  | | |  | |||      | |||||| |||  |||             
AAGTCTAGCTAGTACAATTATTAATATGGCACAGGATTTTGTGGGTAGCAACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaatctgtatataagattttgaacaacatcaatc-ttatgattttgattcaaaacctactttgtaaattgtattaactgtgtaatttgctctttttacag

upper sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G23890.2 (Arabidopsis thaliana), 5'ss of exon 10
GAGTCTTGCCAGCACCATTATTGGCATGGCACAGGACTTTGTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTGGAACTCGTCATCAGgtgactcaaacaagttctgcttcttctacccccatgcatcattttaactgttattcttaccatgt-tatgtttttaactttgttttag
||||||||||||  | || || |||||||| ||||| |  |||||||||||||| || ||| | ||||||||||||||||||||||| || ||   |  ||| | |  | | | |       |  ||     |||  |||  | |   |||  |  | |   |||  |   || ||            
GAGTCTTGCCAGTGCTATCATAGGCATGGCGCAGGATTACGTGGGCAGCAACAATATCAACTTACTTCTACCAAATGGTCAATTTGGTACACGAACTTCGgtaagtatagctaat---agaccaactgttgtcatttatc--tatgcttgtactcatcatagtgtacacaattgtag-----------