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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATTgtaagcacaatttcattacaatacttcatttctccagaattggttttcagttttcacatatatgattttgggttgagggcaataaggatgacaagtttggttgaatcaatgtgaatgttgcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04070.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G26090.1 (Glycine max), 5'ss of exon 11
GGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATTgtaagcacaat---ttcattacaatacttcatttctccagaattggttttcagttttcacatatatgattttgggttgagggcaataagga-tgacaagtttggttgaatcaatgtgaatgttgcag
||||||||||||| | |||||||||||||||||| |||||||||||||||      |||||    || ||  ||  |       || || |   | || |||| |    | |||  || | |||   ||  | |||  |  ||  ||                     
GGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATTgtaagcacagactactcattctgttatttatttatttttcttctgcttctgtttgtttacatttcctttcttgatttaatggctcaaataactgagtaaatttcttag-------------------

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G07100.1 (Glycine max), 5'ss of exon 9
GGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATTgtaagcaca-atttcattacaatacttcatttctccagaattggttttcagttt-tcacatatatgattttgg--gttgagggcaataaggatgacaagtttggttgaatcaatgtgaatgttgcag
||||||||||||| | |||||||||||||||||| ||||||||||||||| | | |    || |   | ||||||      ||  ||||  | |  | |||| |    | |||    | |||  |||  ||      || |||  | |                    
GGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATTgtaagcacagactactactcattctgttatttcttttttcttatttttttgctagttacatttcctttcttgattatagagttcaaatagctgagtaaatttcatag--------------------

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G35640.1 (Glycine max), 5'ss of exon 10
GGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATTgtaagcacaatttcattacaatacttcatttctccagaattggttttcagttttcacatatatgattttgggttgagggcaataaggatgacaagtttggttgaatcaatgtgaatgttgcag
||||||||||||| |||||| ||||||| |||||  |||||||||||||||    |  ||      |||||   |     ||| |  ||  ||||  | | ||| | | ||     |  |   | |   ||| |  |   |                       
GGTGGTATTCTTATTTTTGGATTCCATTTATCCCAGTAATTgtaagcacaa----accac------tcattctgcttatgttgttggtctattttttcttctattaatctgatcataaagt--ttaatgtgaaatttacag-----------------------

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G26100.2 (Glycine max), 5'ss of exon 11
GGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATTgtaagcacaatttcattacaatacttcatttctccagaattggttttcagttttcacatatatgattttgggttgagggcaataaggatgacaagtttggttgaatcaatgtgaatgttgcag
|||||||||| || | |||||||||||||||||| ||| |||||||||||  || | |||      |||||         |||  | |     |    |||| |  |||   | ||   | | ||   || ||   || | |  | | ||||||||| || |||
GGTGGTATTCCTATTATTGGCTTCCATTCATCCCATTAGTTgtaagcacagatt-actac------tcattctgtttatgttgcctattttcctgtctatatttcctttcttgatgtaagta-tataaataacttatt-gttatatttaatgtgaattttacag

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G07110.1 (Glycine max), 5'ss of exon 11
GGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATTgtaagcacaatttcattacaatacttcatttctccagaattggttttcagttttcacatatatgattttgggttgagggcaataaggatgacaagtttggttgaatcaatgtgaatgttgcag
|||||||||| || | |||||||||||| ||||| ||| |||||||||||   |      ||||||   | | |  |  || | || ||  | ||  | |      | ||    | || | | |||  |   ||   ||| |  | | ||||| ||| |  |||
GGTGGTATTCCTATTATTGGCTTCCATTTATCCCATTATTTgtaagcacagact------aatactcattctgtttatgat-gcttgtctatatttccct------tcttcatgtaagtgta-taaataactca---ttgttatatttaatgtaaatttaacag