1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAGgtacgtcctcattgtccttgaaattgtgtattcttttctgctgcatgctttctgatgattattttcaattttctcgctagcatgatcctttctttaatgtaatttaccataacatgaggttacataaaaccag
species | Vitis vinifera |
transcript | Vv13s0019g03960.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAG ATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGCEST: gi|30326467|gb|CD009729.1|CD009729
genomic: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAGgtacgtcctc ... ataaaaccagATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGC
EST: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAG ATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGCEST: gi|110726208|gb|EE101788.1|EE101788
genomic: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAGgtacgtcctc ... ataaaaccagATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGC
EST: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAG ATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGCEST: gi|77586923|gb|DV222608.1|DV222608
genomic: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAGgtacgtcctc ... ataaaaccagATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGC
EST: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAG ATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGCEST: gi|110693582|gb|EE069938.1|EE069938
genomic: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAGgtacgtcctc ... ataaaaccagATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGC
EST: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAG ATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGCEST: gi|110727231|gb|EE103758.1|EE103758
genomic: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAGgtacgtcctc ... ataaaaccagATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGC
EST: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAG ATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGC
genomic: TGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAGgtacgtcctc ... ataaaaccagATGGCGAAATCAATAAAGGAACTTAAGAAGGAAAATATTTTCTTGAAGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCATTGTTAAAGAGCAATGAAGTCTTTGAAACATTTAAGCAAGAGATTGAGAAGgtacgtcctcattgtccttgaaattgtgtattcttttctgctgcatgctttctgatgattattttcaattttctcgctagcatgatcctttctttaatgtaatttaccataacatgaggttacataaaaccag
- - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAGA