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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTCCTACTATCTACACCGACATTAGAGGGCACACTATTCAGTCAAATCAGgtattactcagtattttgaaagttgacatattctaattgttgtatgttattcatcgtgttgtccactgagatgcaaaagcattggtattgtacag

Basic information

species Vitis vinifera
transcript Vv12s0178g00020.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71890676|gb|DT039731.1|DT039731
EST:     TTCCTACCATATACACCGACATTAGAGGGCATACTATTCAGTCAAATCAG                         TTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
genomic: TTCCTACTATCTACACCGACATTAGAGGGCACACTATTCAGTCAAATCAGgtattactca ... tattgtacagTTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
EST: gi|110357757|gb|EC921480.1|EC921480
EST:     TTCCTACCATATACACCGACATTAGAGGGCATACTATTCAGTCAAATCAG                         TTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
genomic: TTCCTACTATCTACACCGACATTAGAGGGCACACTATTCAGTCAAATCAGgtattactca ... tattgtacagTTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
EST: gi|32271127|gb|CD720286.1|CD720286
EST:     TTCCTACCATATACACCGACATTAGAGGGCACACTATTCAGTCAAATCAG                         TTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
genomic: TTCCTACTATCTACACCGACATTAGAGGGCACACTATTCAGTCAAATCAGgtattactca ... tattgtacagTTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
EST: gi|30296234|gb|CB973028.1|CB973028
EST:     TTCCTACCATATACACCGACATTAGAGGGCATACTATTCAGTCAAATCAG                         TTCTCTGTCACAGAGCGTTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
genomic: TTCCTACTATCTACACCGACATTAGAGGGCACACTATTCAGTCAAATCAGgtattactca ... tattgtacagTTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
EST: gi|110363519|gb|EC927113.1|EC927113
EST:     TTCCTACTATCTACACCGACATTAGAGGGCACACTATTCAGTCAAATCAG                         TTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
genomic: TTCCTACTATCTACACCGACATTAGAGGGCACACTATTCAGTCAAATCAGgtattactca ... tattgtacagTTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
EST: gi|34362104|gb|CF403689.1|CF403689
EST:     AGTCAAATCAG                         TTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
genomic: AGTCAAATCAGgtattactca ... tattgtacagTTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
EST: gi|30328230|gb|CD011492.1|CD011492
EST:     TTCCTACCATATACACCGACATTAGAGGGCACACTATTCAGTCAAATCAG                         TTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT
genomic: TTCCTACTATCTACACCGACATTAGAGGGCACACTATTCAGTCAAATCAGgtattactca ... tattgtacagTTCTCTGTCACAGAGCATTTTAGGAGTGCAGAACCTGGTCGCCCACACTCT