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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAATgtaggttaatatttctataattttctagttcttgttcttattttagtgcttgtgtccttcaaccaacatgcttaaccattgtgaacatttctag

Basic information

species Vitis vinifera
transcript Vv12s0059g02310.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA06G46000.1 (Glycine max), 5'ss of exon 10
TGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAATgtaggtt--aatatttctataattttctagttcttgttc-ttattttagtgcttgtgtccttcaaccaacatgcttaaccattgtgaacatttctag----------------------
||||||||||| || |||||||| ||||| |||||||||||||| || || || ||   |||||| || ||||||||||||||  |||| ||||||||| |||  ||| ||| | ||| ||| |  |   | ||  | | |||    | |      |  |   ||  |  | |    |     ||   || ||                      
TGGGATATTCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACACATTGCAAACGGAAGAGACACTGGAAACTGTGTATCTCTACTACGAGTAAATgtatgtttcaatttttttttaaatttattttcactatttgtcaatttgaaacattcccattaaattaaatttagtgagatgtgcatgactaatcaagcaagtcataattaaccatgtag

upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G32050.1 (Glycine max), 5'ss of exon 11
TGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAATgtaggttaatatttctataattttctagttcttgttc-ttattttagtgcttgtgtccttcaaccaacatgcttaaccattgtgaacatttctag-----
||||||||||| || || ||||| |||||||||||||||||||| || || ||||| | |||||| || || ||||| |||||  | ||||| |||||| ||| |   | |  ||       | ||  | ||| | | |||  ||      | |||   |    ||   ||  ||   | || || | |       
TGGGATATTCTTTCCAACGGTGGAGTTGTTCAAGAAATGGCACACATTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATgtaagttgaccataccctatagccacatttactattcatcaatttcatgaaatctttctttttcattaatttctagtcaaactaaagatatgtttgttta

upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G10710.1 (Glycine max), 5'ss of exon 11
TGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAATgtaggttaatatttctataattttctagttcttgttc-ttattttagtgcttgtgtccttcaaccaacatgcttaaccattgtgaacatttctag-----------------------
||||| ||||| || ||||| || ||||| |||||||||||||| || || || ||   ||||||||| ||||||||||||||  | || ||||||||| |||| ||| | ||||  ||     |   | ||| ||||||      |||   | |||  |||  |   | |||       |   |  |||                        
TGGGACATTCTTTCCAATGGAGGAGTTGTCCAAGAAATGGCACACATTGCAAACGGAAGAGACACAGGAAACTGTGTATCTCTACTTCGAGTAAATgtatgtta-tatat-tatatcttatatatgtatattcattatttgtcaatttgaaacattc--ccagtaaattaaactgagtgaagtgtgactaattaactatgtcataaccttgtag

upper sequence: Vv12s0059g02310.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G38430.1 (Glycine max), 5'ss of exon 11
TGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAATgtaggttaat-atttctataa-----ttttctagttcttgttcttattttagtgcttgtgtccttcaa---ccaacatgcttaaccattgtgaacatttctag-----------------------------
||||||||||| || || ||||| ||||| |||||||||||||| || || ||||| | |||||| || || ||||| || ||  | || || |||||| ||| |  |    |||||     ||| ||| |  |   | | |    |    |  | | | | ||   | |      ||||| |  ||||| |  | |                               
TGGGATATTCTTTCCAACGGTGGAGTTGTCCAAGAAATGGCACACATTGCCAATGGCCGAGACACTGGAAATTGTGTCTCCCTACTTCGTGTGAATgtaagttgaccaaccatataaccacatttactattcatcaatttcaccaaatctttctttttcattaatttctagtcaaattaacaaa-gtgaataagtttgactaacccaagtttcgaatggtgcatgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418253|gb|EC984389.1|EC984389
EST:     TAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAAT                         AGTGCAAATTCAAGCCAGAGCAACATGTTGATATTGCAAGAAAGCTGTACT
genomic: TAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAATgtaggttaat ... acatttctagAGTGCAAATTCAAGCCAGAGCAACATGTTGATATTGCAAGAAAGCTGTACT