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GATCCAGATTTAAGGATGCTTTCCAAGATGCTGGTTCATATCTCTCCATAGAGCCTCTGTTTGAGgtatactccttttaggcacaaatggatctctggaatgggaacctctctcttctctctctctctctctcacacacacacagaaggactgattcagtaaaat...
species | Vitis vinifera |
transcript | Vv12s0035g01870.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGCTTTCCAAGATGCTGATTCATATCTCTCCATAGAGCCTCTGTTTGAG A--GAG-G-TATCTAGTGACATATAATCCTTCGAAGGGTAAAGTGTATGCGEST: gi|110711704|gb|EE088489.1|EE088489
genomic: ATGCTTTCCAAGATGCTGGTTCATATCTCTCCATAGAGCCTCTGTTTGAGgtatactcct ... ttggtgacagAAAGAGAGATATCTAGTGACATATAATCCTTCGAAGGGTAAAGTGTATGCG
EST: ATGCTTTCCAAGATGCTGGTTCATATCTCTCCATAGAGCCTCTGTTTGAG AAAGAGAGATATCTAGTGACATATAATCCTTCGAAGGGTAAAGTGTATGCGEST: gi|161717211|gb|FC067217.1|FC067217
genomic: ATGCTTTCCAAGATGCTGGTTCATATCTCTCCATAGAGCCTCTGTTTGAGgtatactcct ... ttggtgacagAAAGAGAGATATCTAGTGACATATAATCCTTCGAAGGGTAAAGTGTATGCG
EST: ATGCTTTCCAAGATGCTGGTTCATATCTCTCCATAGAGCCTCTGTTTGAG AAAGAGAGATATCTAGTGACATATAATCCTTCGAAGGGTAAAGTGTATGCG
genomic: ATGCTTTCCAAGATGCTGGTTCATATCTCTCCATAGAGCCTCTGTTTGAGgtatactcct ... ttggtgacagAAAGAGAGATATCTAGTGACATATAATCCTTCGAAGGGTAAAGTGTATGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCCAGATTTAAGGATGCTTTCCAAGATGCTGGTTCATATCTCTCCATAGAGCCTCTGTTTGAGgtatactccttttaggcacaaatggatctctggaatgggaacctctctcttctctctctctctctctcacacacacacagaaggactgattcagtaaaat
- - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaa