Sequence
atgc intronic sequence ATGC exonic sequenceTTATCAACCTTATCTTATATCTCCAGAAAAAGGTTTAAGGTCTCTAATAAAAATTGTCCTGGAGCTGGCGAAAGAGCCATCACGCCTTTGTGTTGATGAGgtaaccatatcactctccagttgaatgttcaagtttatgcaccagggactgtagtcctgcattgtttattttattttattttatctttttagactttttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G157462_T01 (Zea mays), 5'ss of exon 10
TTATCAACCTTATCTTATATCTCCAGAAAAAGGTTTAAGGTCTCTAATAAAAATTGTCCTGGAGCTGGCGAAAGAGCCATCACGCCTTTGTGTTGATGAGgtaaccatatcactctccagttgaatgttcaagtttatgcaccagggactgtagtcctgcattgtttattttattttattttatctttttagactttttg--
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TTATCAACCATATTTGATATCTCCAGAGAAAGGGTTGAGATCCTTAATAAAAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAGgtacgccc-caaataatcagtaagaaaataaaccaccagaattatgtgtta-gcttctacacatttacttttgttctcccctacccctcaagagacaaacaa
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G40300.1 (Glycine max), 5'ss of exon 10
TTATCAACCTTATCTTATATCTCCAGAAAAAGGTTTAAGGTCTCTAATAAAAATTGTCCTGGAGCTGGCGAAAGAGCCATCACGCCTTTGTGTTGATGAGgtaaccatatcactctccagttgaatgttcaagtttatgcaccagggactgtagtcctgcattgtttattttattttattttatctttttag-actttttg---
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ATATCAACCTTATCTTATCTCTCCAGAGAAAGGTTTGAGATCCTTAATTAAAGGCGTTCTTGAACTGGCAAAGGAGCCATCACGACTGTGTGTTGATGAGgtatgcttctaatgt----gttgtcttgttgatttttttttcaagagctaaaggttacatatgtttaaaaggatttcccgaaatagtttgggtagtggttacaa
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 10
TTATCAACCTTATCTTATATCTCCAGAAAAAGGTTTAAGGTCTCTAATAAAAATTGTCCTGGAGCTGGCGAAAGAGCCATCACGCCTTTGTGTTGATGAGgtaacc------atatcactctccagttgaatgtt-caagtttatgcaccagggactgtagtcctgcattgtttattttattttattttatctttttagactttttg
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TTATCAACCTTATCTTATATCTCCAGAGAAAGGGTTGAGATCGTTGATAAAGATTGTCCTTGAGTTGGCTAAAGACCCGGCACGCCTTTGTGTTGATGAGgtgtgcttgtttacatgtttttttaggtacatgcagtaggattgaattttagaaatt----tactgcattgtgaactg-gctatggcttgtctcactttaattct--
upper sequence: Vv12s0035g01740.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 10
TTATCAACCTTATCTTATATCTCCAGAAAAAGGTTTAAGGTCTCTAATAAAAATTGTCCTGGAGCTGGCGAAAGAGCCATCACGCCTTTGTGTTGATGAGgtaa--ccatatcactctccagttgaatgttcaagtttatgcaccagggactgtagtcctgcattgtttattttattttattttatctttttagactttttg
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TTATCAACCTTATCTCATATCTCCAGAGAAAGGGTTGAGATCGTTAATAAAAACCGTTCTTGAGTTGGCTAAAGACCCAGCACGACTATGTGTTGATGAGgtgtgtccatgttagtgttta-tagcttaactggtgttgtcttcctcttgtttgagatgcgtagcattgaaattcagaaatttactaaatagtgaaatatt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30298644|gb|CB975438.1|CB975438EST: AAATTGTCCTGGAGCTGGCGAAAGAGCCATCACGCCTTTGTGTTGATGAG GTGCACCGTGTGCTTGTTGACATAGTCTCTGCTGCTGCAAATGCTACACCG
genomic: AAATTGTCCTGGAGCTGGCGAAAGAGCCATCACGCCTTTGTGTTGATGAGgtaaccatat ... gccaaaatagGTGCACCGTGTGCTTGTTGACATAGTCTCTGCTGCTGCAAATGCTACACCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATCAACCTTATCTTATATCTCCAGAAAAAGGTTTAAGGTCTCTAATAAAAATTGTCCTGGAGCTGGCGAAAGAGCCATCACGCCTTTGTGTTGATGAGgtaaccatatcactctccagttgaatgttcaagtttatgcaccagggactgtagtcctgcattgtttattttattttattttatctttttagactttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcca