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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCCAAAAACGTTTACCTCCAGAAGCTGTGGATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaatacttttttaagcattccttctcacaaatttgcctgagtggaggtgatctaatggtaaagcatgaatgatcatttctctattgatattgcag

Basic information

species Vitis vinifera
transcript Vv12s0035g01060.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G28730.1 (Glycine max), 5'ss of exon 11
GTCTTCCAAAAACGTTTACCTCCAGAAGCTGTGGATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaatacttttttaagcattccttctcacaaatttgcctgagtggaggtgatctaatggtaaagcatgaatgatcatttctctattgatattgcag
||||| || ||||||||||| |||||||| |||||  | || |||||||| || ||||||||||||||| || ||||||| || ||||||| |||   |   |         || | |   | ||  || |     | |  | |||   ||    |   ||||| |||       ||  | |||||
GTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCCCCCAATTTGAGATGCACTGCAgtaagttgaatgtctccat---------tttttatttacttttctcaccttggatattataaaattattttactcatgat-atta------tggcactgcag

upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 10
GTCTTCCAAAAACGTTTACCTCCAGAAGCTGTGGATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaatacttttttaagcattccttctcacaaatttgcctgagtggaggtgatctaatggtaaagcatgaatgatcatttctctattgatattgcag
|| || || ||||||||||| |||||||| |||||  | || |||||||| || |||||||| |||||| || ||||||| || ||||||| |||   |       ||||  ||   | |   ||  ||      |  ||   ||||   |||  ||   ||| |  |  | |  ||| | |||||
GTTTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCAgtaagttgaatgtctc------catttttttaaaaattatttacttttctcacctgggataatataaaattatt--tgacccatgatattatgacactgcag

upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G00400.2 (Glycine max), 5'ss of exon 10
GTCTTCCAAAAACGTTTACCTCCAGAAGCTGTGGATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaatacttttttaagcattccttctcacaaatttgcctgagtggaggtgatctaatggtaaagcatgaatgatcatttctctattgatattgcag
         ||||||||||| |||||||| |||||  | || |||||||| || |||||||| |||||| || ||||||| || ||||||| |||   |       ||||  ||   | |   ||  ||      |  ||   ||||   |||  ||   ||| |  |  | |  ||| | |||||
---------AAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCAgtaagttgaatgtctc------catttttttaaaaattatttacttttctcacctgggataatataaaattatt--tgacccatgatattatgacactgcag

upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G09840.2 (Arabidopsis thaliana), 5'ss of exon 12
GTCTTCCAAAAACGTTTACCTCCAGAAGCTGTGGATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaatacttttttaagcattccttctcacaaatttgcctgagtggaggtgatctaatggtaaagcatgaatgatcatttctctattgatattgcag
|| |||||||||||||| || |||||||| || ||| |  |||||||||| ||||| || ||||||||| || |||| ||||||||||||| ||| | ||      | |||| ||   || ||| || |         ||||||||     |  ||| ||  | || |  |||  || ||||| ||
GTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCTTCTTTGTAGGTTCTTCCAATATTCCCCCAATTTGAGATGTACAGCTgtaagtt-aattcgttc-----cgttccctc---catattagcatcta-----atgatctaa-----attcattaaaaa-cactcttctggtgttattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30126156|gb|CB911495.1|CB911495
EST:     ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGTACAGCT                         TTGGAAGCTTGCATCCACCCTTTCTTTGATGANGT-GAGGGACCCTAGCAC
genomic: ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaa ... gatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGA-GTTGAGGGACCCTAGCAC
EST: gi|110726124|gb|EE101641.1|EE101641
EST:     ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCT                         TTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
genomic: ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaa ... gatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
EST: gi|27580396|gb|CB003091.1|CB003091
EST:     ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGTACAGCT                         TTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
genomic: ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaa ... gatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
EST: gi|27579322|gb|CB002017.1|CB002017
EST:     ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGTACAGCT                         TTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
genomic: ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaa ... gatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
EST: gi|156736132|gb|EV240253.1|EV240253
EST:     ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGTACAGCT                         TTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGGACC-TAGCAC
genomic: ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaa ... gatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGG-ACCCTAGCAC
EST: gi|27581595|gb|CB004290.1|CB004290
EST:     ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGTACAGCT                         TTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
genomic: ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaa ... gatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
EST: gi|27581007|gb|CB003702.1|CB003702
EST:     ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGTACAGCT                         TTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
genomic: ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaa ... gatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
EST: gi|30130728|gb|CB916067.1|CB916067
EST:     ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGTACAGCT                         TTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
genomic: ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaa ... gatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
EST: gi|110419339|gb|EC985557.1|EC985557
EST:     ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCT                         TTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
genomic: ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaa ... gatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
EST: gi|27579129|gb|CB001824.1|CB001824
EST:     ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGTACAGCT                         TTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT
genomic: ATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaa ... gatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACT