1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCTCACACCATCTGTTGTCTCAATGATGGGAGGTCTGCTACCCTTTGGCAGCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGgtaaatataatgactctttggtttgagtggcttgctaaaaagatactggtgtgagcaaggccatttttttatttgtaaatgaaaacattgcagtgtcttg...
species | Vitis vinifera |
transcript | Vv12s0035g00280.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAG GTGTATTATGTCTATGGCTTTATGCTACTGGTTTTCCTGATTCTCATAATTEST: gi|28958732|gb|CB339359.1|CB339359
genomic: GCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGgtaaatataa ... tgctgggcagGTGTATTATGTCTATGGCTTTATGCTACTGGTTTTCCTGATTCTCATAATT
EST: GCAT-TT-ATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAG GTGTATTATGTCTATGGCTTTATGCTACTGGTTTTCCTGATTCTCATAATTEST: gi|33407406|gb|CF213033.1|CF213033
genomic: GCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGgtaaatataa ... tgctgggcagGTGTATTATGTCTATGGCTTTATGCTACTGGTTTTCCTGATTCTCATAATT
EST: GCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAG GTGTATTATGTCTATGGCTTTATGCTACTGGTTTTCCTGATTCTCATAATTEST: gi|161713978|gb|FC063163.1|FC063163
genomic: GCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGgtaaatataa ... tgctgggcagGTGTATTATGTCTATGGCTTTATGCTACTGGTTTTCCTGATTCTCATAATT
EST: GCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAG GTGTATTATGTCTATGGCTTTATGCTACTGGTTTTCCTGATTCTCATAATT
genomic: GCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGgtaaatataa ... tgctgggcagGTGTATTATGTCTATGGCTTTATGCTACTGGTTTTCCTGATTCTCATAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCACACCATCTGTTGTCTCAATGATGGGAGGTCTGCTACCCTTTGGCAGCATATTTATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGgtaaatataatgactctttggtttgagtggcttgctaaaaagatactggtgtgagcaaggccatttttttatttgtaaatgaaaacattgcagtgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaca