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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCTTGGAAAGGGGGCTCCTTTTTCTCTTTGTTTAACACAAAAGCATTTCTCCAGAGTTGCTTTGGCACGTGGAAAAAATGACAGTGATTTGTGCAGTgtgagttgctttttcctgcttttttttttttataaagaaaagaaaacttattttgctaattcccaaaaggccacaaattttaagaagtaacgggtattttcctgcaattggctgtatccag

Basic information

species Vitis vinifera
transcript Vv11s0016g04290.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G047564_T02 (Zea mays), 5'ss of exon 8
AGGTCTTGGAAAGGGGGCTCCTTTTTCTCTTTGTTTAACACAAAAGCATTTCTCCAGAGTTGCTTTGGCACGTGGAAAAAATGACAGTGATTTGTGCAGTgtgagttgctttttcctgcttttttttttttataaagaaaagaaaacttattttgctaattcccaaaaggccacaaattttaagaagtaacgggtattttcctgcaattggctgtatccag
|||  |||  || || ||||| |||||||||||||||||||| |||||||||||   |||||| |  |||  ||| |  | |||     |||| |  |  ||| |        ||  |  |  | |       ||  |    ||   ||  |   | | ||  | |       | |||| |     ||    ||| | || | |                 
AGGAATTGAGAAAGGCGCTCCATTTTCTCTTTGTTTAACACAGAAGCATTTCTCTCAAGTTGCATCAGCATATGGGACTAGTGAACACTATTTATCTAAGgtgtgaa------tctagtatcctctaggactgaacaatttcaattgttcatgaaccacttatctatgtattgctaattctg----gtgtttggtgtgtttcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110699628|gb|EE076795.1|EE076795
EST:     TCTCCAGAGTTGCTTTGGCACGTGGAAAAAATGACAGTGATTTGTGCAGT                         TTAAGCGGCGTGATGAAAACTGAATATCGCATTGCTTTGAGGTCTTCTCTT
genomic: TCTCCAGAGTTGCTTTGGCACGTGGAAAAAATGACAGTGATTTGTGCAGTgtgagttgct ... ctgtatccagTTAAGCGGCGTGATGAAAACTGAATATCGCATTGCTTTGAGGTCTTCTCTT
EST: gi|110363815|gb|EC927434.1|EC927434
EST:     TCTCCAGAGTTGCTTTGGCACGTGGAAAAAATGACAGTGATTTGTGCAGT                         TTAAGCGGCGTGATGAAAACTGAATATCGCATTGCTTTGAGGTCTTCTCTT
genomic: TCTCCAGAGTTGCTTTGGCACGTGGAAAAAATGACAGTGATTTGTGCAGTgtgagttgct ... ctgtatccagTTAAGCGGCGTGATGAAAACTGAATATCGCATTGCTTTGAGGTCTTCTCTT
EST: gi|110399519|gb|EC966027.1|EC966027
EST:     TCTCCAGAGTTGCTTTGGCACGTGGAAAAAATGACAGTGATTTGTGCAGT                         TTAAGCGGCGTGATGAAAACTGAATATCGCATTGCTTTGAGGTCTTCTCTT
genomic: TCTCCAGAGTTGCTTTGGCACGTGGAAAAAATGACAGTGATTTGTGCAGTgtgagttgct ... ctgtatccagTTAAGCGGCGTGATGAAAACTGAATATCGCATTGCTTTGAGGTCTTCTCTT