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ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagccacatccagaaattttgttaacgtgtttagaactgtcataaagtacaacatgaaacattgtctactattggaacaagtcactgtgccctac...
species | Vitis vinifera |
transcript | Vv11s0016g03200.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAA ACTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|110727031|gb|EE103356.1|EE103356
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|45771236|gb|CN007088.1|CN007088
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|83275538|gb|DV939546.1|DV939546
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCGGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|110428851|gb|EC995334.1|EC995334
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|83276122|gb|DV940130.1|DV940130
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCGGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|110390246|gb|EC955146.1|EC955146
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|77588241|gb|DV223328.1|DV223328
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: GCAAGTCAGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|30253347|gb|CB970898.1|CB970898
genomic: GCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|71887181|gb|DT036236.1|DT036236
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCGGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAEST: gi|77589174|gb|DV223847.1|DV223847
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACA
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCGGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|83275983|gb|DV939991.1|DV939991
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCACTACAAGGATACEST: gi|71884795|gb|DT033850.1|DT033850
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCGGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|46910495|gb|CN545870.1|CN545870
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|30253270|gb|CB970821.1|CB970821
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|110421097|gb|EC987385.1|EC987385
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATACEST: gi|71884047|gb|DT033102.1|DT033102
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
EST: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCGGATAAAAACCCTCCCAA ATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
genomic: TGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagcc ... attctgccagATTTCCTCCAGTCAAATGTGGGACTTACCTGACCCAGCGCTACAAGGATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGCCTACTTTGTGGAACCTAGTCATGATTGTCTTGTTGAATGCTTGCCAACCTGCAAGTCAGATAAAAACCCTCCCAAgtaagtagccacatccagaaattttgttaacgtgtttagaactgtcataaagtacaacatgaaacattgtctactattggaacaagtcactgtgccctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaacaa