1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAGATGGGAAAGACAAGTCAAATGATGAAGCTCCAGAGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggattcttctcttttactcatagtcatgacaatattagttatattatatatatatatatataaccataaagtggtataagtattatgttgtctttg...
species | Vitis vinifera |
transcript | Vv11s0016g00700.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAA GTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCTEST: gi|156737274|gb|EV241395.1|EV241395
genomic: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggattc ... ataattgcagGTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCT
EST: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAA GTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCTEST: gi|110428951|gb|EC995435.1|EC995435
genomic: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggattc ... ataattgcagGTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCT
EST: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTTAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCTEST: gi|110384421|gb|EC948856.1|EC948856
genomic: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggattc ... ataattgcagGTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCT
EST: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCTEST: gi|110685604|gb|EE062468.1|EE062468
genomic: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggattc ... ataattgcagGTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCT
EST: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCTEST: gi|110685748|gb|EE062738.1|EE062738
genomic: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggattc ... ataattgcagGTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCT
EST: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG GTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCT
genomic: AGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggattc ... ataattgcagGTTACTTCAGTTGACCTCCACCGACATTTTCATGCACTTGGCGCTGGAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATGGGAAAGACAAGTCAAATGATGAAGCTCCAGAGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGgcaaggattcttctcttttactcatagtcatgacaatattagttatattatatatatatatatataaccataaagtggtataagtattatgttgtctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccataa