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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAGgtaattttcaattatgagcatttgagagaagtttttgcgatttctttgagttaaatgcaactgatgctcattcccattcgtggctgcag

Basic information

species Vitis vinifera
transcript Vv10s0003g02670.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G11630.1 (Glycine max), 5'ss of exon 8
GTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAGgtaa-----------ttttcaattatgagcatttgagagaagtttttgcgatttctttgagtt----aaa----tgcaactgatgctcattcccattcgtggctgcag
 ||||||||||| |||||  ||||||| ||||||||| |||| |||||| |||||||||| || |||||||| ||||||||||||||||           || |  |   ||   ||||       |||  ||     ||  ||| ||    |||    || | |||||  | |||     |  |  ||||||
ATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCATAGGGGTGCTTATGATTTTCTCTATCTGCCAATTGACTTTAAGgtaaataatttgctcttctagaagttgtttatttttcctgtgttgatgtttgctccctgaattttttaaacttgtgaagctgat--taattttttcttcttactgcag

upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G23420.1 (Glycine max), 5'ss of exon 10
GTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAGgtaatt------ttcaattatgagc-----atttgagagaagtt---------tttgcgatttctttgagttaaatgcaactgat-gctcattcccattcgtggctgcag
 |||||||| || |||||  ||||||| ||||||||| |||||||||||||||||||||| || ||  |||| |||||||||||||||| |       || | || |||      ||||   | | |||         |    || || ||  |  |   || | |||||   |  || |   |  |  | ||||
ATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAGgtaaataatttgctctactaggagttgtttattttgcatatgttgcttattgctccctgactttttcaaacttg-tgaagctgattatttttttcttctaataaccgcag