Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGCTACCAACACCCTGGAGAGAGTGGCACCTCTCACACATGCAGTTGGCAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttcatcttttttctgtttgatttgcttattgctgccttctccctaaacatcatatgcccagaagatatctaacagcgtacttctcacag

Basic information

species Vitis vinifera
transcript Vv10s0003g00300.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G32190.1 (Glycine max), 5'ss of exon 10
CTAGCTACCAACACCCTGGAGAGAGTGGCACCTCTCACACATGCAGTTGGCAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgt--tcatctttttt-ctgtttgatttgcttattgctgccttctccctaaacatcatatgcccagaagatatctaacagcgtacttctcacag
 | ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||  |||||||||| ||||||||||| || || ||  | ||||||||||||| |  | |||||  || || ||  | ||     ||      |  |   | |  |  |  |    | |   |  ||       | |||| || ||
GTGGCTACCAACACACTGGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGGAACGTACTGAAACGTGTATTTGTGATTGGATTTTCAATTATAGTCTTTGgtaaatatcgttatcttccttgctattaaacttaaactttcacaggtgtttatttattagtacttttaaacattctgactgggtaattgcttcacatag

upper sequence: Vv10s0003g00300.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G24360.1 (Glycine max), 5'ss of exon 10
CTAGCTACCAACACCCTGGAGAGAGTGGCACCTCTCACACATGCAGTTGGCAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttcatcttttttctgtttgatttgcttattgctgccttctccctaaacatcata---tgcccagaagatatctaacagcgta----cttctcacag
 | ||||||||||| |||||||||||||| |||||||| ||||||||||| |||||  |||||||||| ||||| ||||| ||||| ||  | ||||| ||||||| |   | | |    || |||   |  | |    |  |||    | |    | ||    |||    ||    ||| || | |||    ||||  ||||
GTGGCTACCAACACACTGGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGGAACGTACTGAAACGTGTATTTGTCATTGGATTCTCTATTATAGTCTTCGgtaaatatctttatctcccttgattg--ctattaaactttaactttcaacaagtgtttatttattgcttttaaacattctgactgggtaattgcttcatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77583035|gb|DV220554.1|DV220554
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTA
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTA
EST: gi|46910969|gb|CN546344.1|CN546344
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|28965272|gb|CB344305.1|CB344305
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACCCAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|110388308|gb|EC953043.1|EC953043
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|110376459|gb|EC941524.1|EC941524
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|349829387|gb|FQ419919.1|FQ419919
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|351031379|gb|FQ445404.1|FQ445404
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|229418699|gb|GO652936.1|GO652936
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|71870783|gb|DT019838.1|DT019838
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|110363008|gb|EC926573.1|EC926573
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|22013243|gb|BQ798277.1|BQ798277
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|349813488|gb|FQ413722.1|FQ413722
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|110361951|gb|EC925457.1|EC925457
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|71883070|gb|DT032125.1|DT032125
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|28965323|gb|CB344356.1|CB344356
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|18458226|gb|BM436504.1|BM436504
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|32244911|gb|CD710730.1|CD710730
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|351048322|gb|FQ449414.1|FQ449414
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACT
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACT
EST: gi|30252957|gb|CB970508.1|CB970508
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|110426800|gb|EC993222.1|EC993222
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|30131378|gb|CB916717.1|CB916717
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|34542626|gb|CF510858.1|CF510858
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|352794370|gb|FQ481601.1|FQ481601
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|33401641|gb|CF207268.1|CF207268
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|110389432|gb|EC954269.1|EC954269
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG
EST: gi|351049192|gb|FQ449914.1|FQ449914
EST:     CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTG                         GTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCATTTGCTG
genomic: CAACGTCTTGAAACGTGTTTTTGTGATTGGTTTCTCGATCTTGGTCTTTGgtaaatgttc ... cttctcacagGTAACAAGATTTCAACACAAACTGGTATTGGAACATGCGTTGCAATTGCTG