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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag

Basic information

species Vitis vinifera
transcript Vv09s0054g01780.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os06g49130.2 (Oryza sativa), 5'ss of exon 10
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaat---ttcctgaaataagtttttattcctcccta-atccttctggttggtgtgcacaaaattttctatttcag
| |||||||||||||| |||||| | || |||||||| || || |||||||||||||| || |||||||| |||||||| |||||||||||  |  | |||| |||      || | | |  |       | | |  | | ||| |||| |   |   ||  ||   |||   | |   | |  |   |      |||||  ||                      
GTTATATATGGGCTTGCCCTCCTGTTAAAGGTGAAGATTACATTTTGTATTGCCATCCAGAGATTCAGAAGACACCAAAGTCTGATAAACTGCGTCAGTGgtaaga----ccatagattggcatctatgttgttatccttgttaatagtgtggctgcatttgtggggtaatgctctgcccttggcagcaaaaaaatggtttctg----------------------

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 5'ss of exon 11
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag
| || |||||||| || || ||||| || |||||||| || || ||||| ||||||||||| |||||||| || |||||||| || ||| | || || |||| |||       | |||        ||   ||   | | | | ||   ||  |  || |  | |     |   |||     ||  | ||    |  |                        
GTTACATATGGGCGTGCCCACCTTTAAAAGGTGAAGATTACATTTTGTACTGCCATCCTGAGATTCAGAAGACTCCAAAATCCGACAAATTGAGGGAGTGgtaaga----cctttgtt--------gacacttctgttactctgctcacttttagctcttctagtttacatgatttctgatgta--ctttacactcag------------------------

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G139977_T02 (Zea mays), 5'ss of exon 4
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag
| || |||||||||||||| ||||||||||||||||| || || || |||||||||||||| ||||| || || || ||||||||||||||  | || |||| ||  |                ||||      | | || ||  |  ||| |  | |   |    |||| | ||  ||     | ||                                  
GTTACATATGGGCTTGTCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGATAAACTGCGTGAGTGgtaagcct----------------tagagacacaattgatcttgttgcttttagatcctcca--ccagttctaatgtcttttacacccag--------------------------------

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G470556_T01 (Zea mays), 5'ss of exon 10
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagt--agttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag
| || ||||||||||| || ||||||||||||||||| || || || |||||||||||||| ||||| || || || |||||||| |||||  | || |||| ||  |   ||   |  | |    |     ||| |     |  || | ||  ||| || |  |      | |||| |  ||                                         
GTTACATATGGGCTTGCCCACCTTTGAAGGGTGAAGATTACATCTTATATTGCCATCCTGAGATTCAAAAGACTCCGAAATCTGACAAACTGCGTGAGTGgtaagccttaggtgtccaattggtcttgttgcttttagatcctccaccatttctaatgtctttta-----ctcttatccacccag---------------------------------------

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 11
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgag---agtagttatcgttagaa---aatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag
|||| |||||||| |||||||| || ||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||| || || ||||||| ||   |  || |   |    ||   |||   |   ||||      || | |||| |  |     ||||  | |     | |||  |  |   | | ||| || |    || | |||| |   |||
GCTACATATGGGCATGTCCTCCATTAAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCTGATAAGCTTAGGGAATGgtaagtttaaaagcttcaggataaacataatgagaaagtgaagttgcctaattgttttacatgtacaaaat--gctcaaggtactcatttctaactatagtttgtttcatgaacaatttccaa--cag

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 13
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag
||||||| ||||| |||||||| || ||||| ||||| ||||| || ||||||||||| ||||||||||||||||||||||| ||||| ||  | ||||||||||  || | | | | || | | | ||  |  ||  |  ||     |||   || | || |  | ||  |||    |   | |||  |    |  |  |    |||  | | |  |||||
GCTATATCTGGGCCTGTCCTCCATTAAAGGGAGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCCGATAAGCTACGTGAATGgtgagcctaat-agcttcagtatagacaaaatgaaaaaaagttgtctatttattttccttgtacaatgtgattagg--ttatttatctctaacttcagcatttgtaaacatgttt-cttcag

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G00230.1 (Glycine max), 5'ss of exon 11
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaata-gaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag
||||||| |||||||||||||| || ||||| ||||| ||||| || ||||||||||| |||||||||||||| |||||||| ||||| ||  | |||||||||| ||| | | | | || | |||  || |  |||  |   |  |   || | ||||||   | ||  |  |     |   | |||  |    |  |  |     ||  | | |  | |||
GCTATATCTGGGCTTGTCCTCCATTAAAGGGGGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACCCCAAAATCCGATAAGCTACGTGAATGgtgagcgtaat-agcttcagtatatacaaaatgagaaaaaaacttgtctatttattttccttgtacaatgtgattaggtttattcatctctaacttcagcatttgtcaacatgttt-ctgcag

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 11
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtg-agagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag
||||||||||||| || || ||| | ||||||||||| ||||| || |||||||||||||||||||||||||| |||||  |||||||||| || |||||||   || ||  ||   |     ||||   ||||    | | | |  ||     ||| | |  ||| | |   || | |||| |   | ||   |                            
GCTATATATGGGCATGCCCCCCTCTTAAGGGTGAAGATTATATTTTATATTGCCATCCTGAAATTCAGAAAACGCCAAAGACTGATAAACTAAGGGAATGgtatggaatatatactttcctgtaatacttgtttttcacgtgtaag-agagaatattgcatataatga-tgcataatactcctt--ccttttcag----------------------------

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G16710.1 (Arabidopsis thaliana), 5'ss of exon 11
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag
|||| |||||||||||||| ||  |||||||||| || |||||  | ||||||||||| |||||||||||||||||||| |||||||||||  | ||||||| ||  || || || || |                | |||||  |  |     |||| |   | ||   ||||   |  || | |   ||    |||| | ||||                
GCTACATATGGGCTTGTCCACCACTGAAGGGTGAGGATTATATCCTATATTGCCATCCAGAAATTCAGAAAACACCAAAGTCTGATAAACTACGGGAATGgtcagtctaattgtctttgg----------------tgattttcttcatacagttttcgtaggaaaatcctttacatcctccaatttgctcc---tggtctacacag---------------

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 5'ss of exon 12
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttatcgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag
|||| |||||||||||||| ||  ||||||| || || ||||| || ||||| ||||| ||||||||||| || |||||||||||||||||  |||| |||| ||   | ||| | ||     || ||| || | |   ||| |               ||||| |    ||||   |  || ||     |  |||| | | | ||                
GCTACATATGGGCTTGTCCGCCGCTGAAGGGCGAGGATTATATCTTATATTGTCATCCAGAAATTCAGAAGACGCCAAAATCTGATAAACTACGAGAGTGgtcagttcatttacctttttgggat-gaacttcgtaaactttcata-------------tgaaaaagtcatttacatcatcc-aactgcccacgttgttattcgcag---------------

upper sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ34595 (Selaginella moellendorffii), 5'ss of exon 9
GCTATATATGGGCTTGTCCTCCTTTGAAGGGTGAAGACTATATATTGTATTGCCATCCTGAAATTCAGAAAACACCAAAATCTGATAAACTCAGAGAATGgtgagagtagttat---cgttagaaaatagaagtttgaatcattttactagtttcaatttcctgaaataagtttttattcctccctaatccttctggttggtgtgcacaaaattttctatttcag
| ||||| ||||||||||| ||| |    || |||||||||||| ||||||||||||| || || || || ||||| || || ||||||||| |||||||||||||    | ||   | | |     | ||||| |  ||  ||||||                                                                             
GTTATATTTGGGCTTGTCCACCTCTTCGAGGAGAAGACTATATACTGTATTGCCATCCGGAGATCCAAAAGACACCTAAGTCGGATAAACTCCGAGAATGgtgagatgcttcatgagcatcatttgcttgaagtgtatat-gttttacag---------------------------------------------------------------------------