Sequence
atgc intronic sequence ATGC exonic sequenceCTTTAAAAGTATGTACCGCCACATTTCCAAGGGATCGTGGACATTCTCCGATCAGGATCATGGTTGGCAAGTTTCTGACTGCACTGCAGAAGGTTTGAAGgtaaccaattctgctaaaatacttcaattgaatcagggtttgcaggttaactataatcacttggtttctcactggagtcccctctctgttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01220.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G24160.2 (Glycine max), 5'ss of exon 4
CTTTAAAAGTATGTACCGCCACATTTCCAAGGGATCGTGGACATTCTCCGATCAGGATCATGGTTGGCAAGTTTCTGACTGCACTGCAGAAGGTTTGAAGgtaaccaatt--ctgctaaaatactt--caattgaatc--agggtttgcaggt--taactataatcacttggtttctcactggagtcccctctctgttacag
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TTTTAAAAGTATGTATCGTCATATTTCTAAAGGATCTTGGACATTCTCTGATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAAGTTTAAAGgtacgtaactaacaacttaggtcataaacaacttaatctgaagctttattaatgatcgcaacaaatatatgttaatttaactaaacttcttgt--gttgtag
upper sequence: Vv09s0054g01220.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 10
CTTTAAAAGTATGTACCGCCACATTTCCAAGGGATCGTGGACATTCTCCGATCAGGATCATGGTTGGCAAGTTTCTGACTGCACTGCAGAAGGTTTGAAGgtaaccaattctgctaaaatactt--caattgaatc--agggtttgc--aggttaactataatcacttggtt-tctcactggagtcccctctctgttacag
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TTTTAAAAGTATGCATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtagccaa--caacttaggtcataaacaacttaatctaaagctttgttaatgatcacaacaaatatatgttaatttaactaaaatt---tttgtgttgtag
upper sequence: Vv09s0054g01220.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 7
CTTTAAAAGTATGTACCGCCACATTTCCAAGGGATCGTGGACATTCTCCGATCAGGATCATGGTTGGCAAGTTTCTGACTGCACTGCAGAAGGTTTGAAGgtaac---caattctgct-----aaaatacttcaattgaat--cagggtttgcaggttaactataatcacttggtttctcactggagtcccctctctgttacag
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TTTTAAGAGTATGTATCGTCATATTACTAAAGGGTCTTGGACATTCTCAGATCAAGACCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGgtatctgacaacttagctcgtgaaaaatcaattaatttaataataagctttatcaattacaaatatatgttaatataactaattaaagttcttctgtgttttag
upper sequence: Vv09s0054g01220.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA03G27660.1 (Glycine max), 5'ss of exon 3
CTTTAAAAGTATGTACCGCCACATTTCCAAGGGATCGTGGACATTCTCCGATCAGGATCATGGTTGGCAAGTTTCTGACTGCACTGCAGAAGGTTTGAAGgtaaccaattctgc---taaaatacttcaattgaatcagggtttgcaggttaactataatcacttggtttctcactggagtcccctctctgttacag
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TTTTAAGAGTATGTATCGTCATATTTCTAAAGGGTCTTGGACATTCTCTGATCAAGATCAGGGATGGCAAGTTTCTGATTGCACGGCAGAAACTTTGAATgtaactaacttagctcataaacaacttaatttgttataagctttatcaatca-ctacaaatatatg-----ttaatttagcttttttttttttag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34546875|gb|CF515107.1|CF515107EST: ATCAGGATCATGGTTGGCAAGTTTCTGACTGCACTGCAGAAGGTTTGAAG TGCTGTCTTCCCTTCTCAATGATGCCACCCGAAATTGTTGGTGTGAAGATG
genomic: ATCAGGATCATGGTTGGCAAGTTTCTGACTGCACTGCAGAAGGTTTGAAGgtaaccaatt ... tctgttacagTGCTGTCTTCTCTTCTCAATGATGCCACCCGAAATTGTTGGTGTCAAGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTAAAAGTATGTACCGCCACATTTCCAAGGGATCGTGGACATTCTCCGATCAGGATCATGGTTGGCAAGTTTCTGACTGCACTGCAGAAGGTTTGAAGgtaaccaattctgctaaaatacttcaattgaatcagggtttgcaggttaactataatcacttggtttctcactggagtcccctctctgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG