Sequence
atgc intronic sequence ATGC exonic sequenceAACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os02g33490.1 (Oryza sativa), 5'ss of exon 10
AACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattctacaactgaatttttcaataatgttggctgaatcaaaagga-------actttagtgctttgtttttaacttgatacaaaatgctcttacag
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TACAATGGGGATGCTTAGCACAGCAGCATATGTTCTCACCATGGACATGTTTGGTCCAATAGCTGACAATGCTGGTGGTATTGTGGAGATGAGTCAGCAGgtaatacactcgtattttttcccatgtatatagcagttcaaaccaatattttgtctttgctgtaggtttttatttaccgtttctgttaatatgct-ttact-
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G069410_T01 (Zea mays), 5'ss of exon 2
AACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgta-gcca--------ttctacaactgaatttttcaata----atgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacag
||||||||| ||||| |||||||| | |||||||| || ||||| ||||||||||| |||||||| || |||||||| || || |||||||| ||||||||| | || || || | || || | | | | | || || | |||| | || || | || | | ||||| || |||
AACAATGGGGATGCTTAGCACTGCAGGGTATGTTCTCACCATGGACATGTTTGGTCCTATAGCTGACAACGCTGGTGGTATTGTTGAGATGAGCCAGCAGgtatggcacatgtttcttttatagctcaaacctccgctgtagcctataggttgtagcaaaca-acctgtattatttaatactctttccattacaagat-ctc------
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G075900_T01 (Zea mays), 5'ss of exon 10
AACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagcca--------ttctacaactgaa--tttttcaataa--tgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacag
|||||||| ||||| ||||| || | |||||||| || ||||| ||||||||||| |||||||| ||||||||||| || || |||||||| ||||||||| || || | | || || | | | || ||| || || | ||| | | || || | || || || ||||||||
GACAATGGGGATGCTTAGCACAGCAGGGTATGTTCTCACCATGGACATGTTTGGTCCTATAGCTGACAATGCTGGTGGTATTGTTGAGATGAGCCAGCAGgtatacacatgtttcttttgtagctcaaacctgtgctgtagcctgtaggttgtagcaaca--atctgtattatttagtgcttttgccattacaaaatttcaa-----
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G00350.1 (Glycine max), 5'ss of exon 10
AACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacag
||||||||||||||| ||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| || | | | || || ||| |||| || || | |||| ||| | ||| || || | || |||
AACAATGGGAATGCTTAGCACTGCTGCCTATATTCTTACCATGGATATGTTTGGCCCAATAGCTGATAATGCTGGAGGAATTGTAGAGATGAGTCAGCAGgtagttcttgctagaataatttggtccatagtgtt------atttctgagattcctcttgctatgtat---actgactattaacctgtttt-cag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G24120.4 (Glycine max), 5'ss of exon 9
AACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacag
||||||||||||||| || |||||||||||| |||| || |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| || | | | || || ||| ||| | | || | ||| ||| | ||| || || || || |||
AACAATGGGAATGCTTAGTACTGCTGCCTATATTCTTACCATGGATATGTTTGGCCCAATAGCTGATAATGCTGGAGGAATTGTAGAGATGAGTCAGCAGgtagttcttgctagaataatttggtccatagagttctttctgt------gattcctcatgccatgtgt---actgactattaac--ctttttcag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G16780.1 (Arabidopsis thaliana), 5'ss of exon 11
AACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacag
|||||||||||| |||||||||| || |||||||| || ||||| ||||||||||| |||||||||||||| ||||| || || |||||||| ||||||||| | | | || || ||| ||| | ||| ||| |||| | | ||||| |||| |||
TACAATGGGAATGTTGAGCACTGCAGCTTATGTTCTTACAATGGACATGTTTGGTCCCATAGCTGATAATGCAGGTGGGATTGTTGAGATGAGCCAGCAGgtatgagtc--atgagtgg---ttcgaattatgcctatgttgtatctttgaattttcaagcttc-tataaaacttatcgtg------tcttgcag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G78920.2 (Arabidopsis thaliana), 5'ss of exon 10
AACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctct-tacag
|||||||||||||| |||||||| || ||||| || |||||||| |||||||| || |||||||| || |||||||| || || |||||||| ||||||||| || ||| ||| | | | | | || || ||||| | | | | || ||| ||||| | | |||
TACAATGGGAATGCTAAGCACTGCAGCTTATGTCCTTACTATGGACATGTTTGGCCCCATAGCTGACAACGCTGGTGGGATTGTCGAGATGAGCCAGCAGgtaag-atgtcaca--tgattggcttgaaaggctcttatgttccat------cttta---ttctatgtagaa----ataataaatgtttcgtgcag
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ13082 (Selaginella moellendorffii), 5'ss of exon 9
AACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacag
|||||||| |||||||| || ||||| || || | || ||||| ||||||||||| || |||||||||||||| ||||| || |||||||| || || ||| | ||| | | || | |||| |||| || ||| |
TACAATGGGGATGCTGAGTACAGCTGCGTACGTGTTGACCATGGACATGTTTGGTCCCATTGCTGATAATGCTGGCGGAATTGTTGAGATGAGCCAACAAgtaa-----gtgcaatttcgtgttcta----tgtt--ttgaactggaatttggttttgcag----------------------------------
upper sequence: Vv09s0054g00700.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: EFJ14101 (Selaginella moellendorffii), 5'ss of exon 9
AACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacag
|||||||| |||||||| || ||||| || || || || ||||| ||||||||||| || |||||||||||||| ||||| || |||||||| || || ||| | ||| | | || | | | || ||| | | | | ||
TACAATGGGGATGCTGAGTACAGCTGCGTACGTGCTGACCATGGACATGTTTGGTCCCATTGCTGATAATGCTGGCGGAATTGTTGAGATGAGCCAACAAgtaa-----gtgcaatttcgtgttcta-tgtttttaactgga---atttggtttgcag-------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77580819|gb|DV219323.1|DV219323EST: TTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAG CCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACC
genomic: TTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattc ... gctcttacagCCTGAAAGTGTTCGGGAGATCACTGATCTTCTTGATGCAGTTGGGAACACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAATGGGAATGCTGAGCACTGCTGCCTATGTTCTAACTATGGATATGTTTGGTCCAATAGCTGATAATGCTGGTGGAATAGTAGAGATGAGTCAGCAGgtagccattctacaactgaatttttcaataatgttggctgaatcaaaaggaactttagtgctttgtttttaacttgatacaaaatgctcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG