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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGACATCTATGAAAGGTCTGTTAAGCTTGGTCCGAAGAACAACACCATCATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAGgtaatatttgattccaaaatactcatttgttctactgcactaatatttgaccattagcattttggtgctatttgttttttctatatatgtgcag

Basic information

species Vitis vinifera
transcript Vv09s0054g00370.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G23730.1 (Glycine max), 5'ss of exon 10
GGAGACATCTATGAAAGGTCTGTTAAGCTTGGTCCGAAGAACAACACCATCATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAGgtaatat-ttgattccaaaatactcat-ttgttctact--gcact-aatatttgaccattagcattttggtgctatttgtttttt--ctatatatgtgcag
||||| ||| |||||||| |||| ||| ||| |  | ||| |||||||||| ||||| || |||||||||||||| ||||| |  |||||    ||||| |||  || |||     | |||| |  | ||||  || |  | | | |  || |||   |  |  | |||||   ||||    ||   |    ||  |||||
GGAGAAATCAATGAAAGGCCTGTCAAGTTTGATTAGGAGATCAACACCATCTTCTTTTACTTATATATGTGAGAAGAATGGAGGATCTCTCACAGACAAAgtatgatattgcacttacaatatttgtattgtcatatttagtatttaccatatgatgttctgggtgttggtataattttccattcaaccgagtacctgcag

upper sequence: Vv09s0054g00370.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G51590.1 (Arabidopsis thaliana), 5'ss of exon 10
GGAGACATCTATGAAAGGTCTGTTAAGCTTGGTCCGAAGAACAACACCATCATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAGgtaatatttgattccaaaatactcatttgttctactgcactaatatttgaccattagcattttggtgctatttgttttttctatatatgtgcag
||||| ||| ||||||||| ||||||||||||||   | | ||||||| ||||| || || |||||||||||||| || ||  ||  | ||  ||| ||||||| |  | |||| ||     |||  |  ||||||     ||| ||      || |  |||||     ||||     |||             
GGAGAAATCAATGAAAGGTTTGTTAAGCTTGGTCAAGAAATCAACACCTTCATCATTTACGTATATATGTGAGAAGAACGGAAATAATTTGATTGATAAGgtaaaaact-attctaat---ttcaact-ctctactttgagaatttt-----gttgg--ttttgacataatttcaacattcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402283|gb|CF207910.1|CF207910
EST:     CATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAG                         ATGGATGAATTAGCATGCTTTGCCCCAGGAATGATTGCTTTAGGATCACTT
genomic: CATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAGgtaatatttg ... atatgtgcagATGGATGAATTAGCATGCTTTGCCCCAGGAATGATTGCTTTAGGATCACTT
EST: gi|46917940|gb|CN547269.1|CN547269
EST:     CATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAG                         ATGGATGAATTAGCATGCTTTGCCCCAGGAATGATTGCT
genomic: CATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAGgtaatatttg ... atatgtgcagATGGATGAATTAGCATGCTTTGCCCCAGGAATGATTGCT
EST: gi|71863682|gb|DT012737.1|DT012737
EST:     CATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAG                         ATGGATGAATTAGCATGCTTTGCCCCAGGAATGATTGCTTTAGGATCACTT
genomic: CATCTTTCACATATATATGTGAGAAAAATGGGGATTCTCTGCATGACAAGgtaatatttg ... atatgtgcagATGGATGAATTAGCATGCTTTGCCCCAGGAATGATTGCTTTAGGATCACTT