Sequence
atgc intronic sequence ATGC exonic sequenceAGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAGGTTCTGAAGGgtgagtgctttataagcatattggttagtacttagaagtttgaagcttatttaggtcctgtttggcacagttgtggcttttcattaaattcttttaaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G23930.1 (Glycine max), 5'ss of exon 10
AGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAGGTTCTGAAGGgtgagtgctttataagc---atattggttag-tacttagaagtttgaagcttatttaggtcctgtttggcacagttgtggcttttcattaaattcttttaaaaa--------------------------------
|||| ||||| |||||||| ||| |||||||||| | ||||| ||||| |||| |||||||| |||||||| ||||||||| |||| ||||||||||||||||| || || |||| | || || ||| |||| | || || | || | | |||| | | || || | ||
AGGAACTTGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTGCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGgtgagtttattgcttgccatatatagtatatctagttatccgttttacattt-cataaccattacttaatggatccattatctttcttcatatactgtatcaattgttggttgtcactttttccccatgtatgcag
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G23930.2 (Glycine max), 5'ss of exon 10
AGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAGGTTCTGAAGGgtgagtgctttataagc---atattggttag-tacttagaagtttgaagcttatttaggtcctgtttggcacagttgtggcttttcattaaattcttttaaaaa
|||| ||||| |||||||| ||| |||||||||| | ||||| ||||| |||| |||||||| |||||||| ||||||||| |||| ||||||||||||||||| || || |||| | || || ||| |||| | || || | || | | |||| | | || || |
AGGAACTTGGTAAGCAGAATCCTGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTGCAGTTGATAAATGAACCTGTTGATGGTTCTGAAGGgtgagtttattgcttgccatatatagtatatctagttatccgttttacattt-cataaccattacttaatggatccattatctttcttcatatactgtatc---
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G00490.2 (Glycine max), 5'ss of exon 9
AGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAGGTTCTGAAGGgtgagtgctttataagc---atattggttagtac-ttagaagtttgaagcttatttaggtcctgtttggcacagttgtggcttttcattaaattcttttaaaaa
|||| ||||| |||||||| || |||||||||| | ||||| ||||| |||| |||||||| |||||||| ||||||||| |||| ||||||||||||||||| || || |||| | || || ||| |||| | || || | || | | |||| | | || | ||
AGGAACTTGGTAAGCAGAATCCCGGTCTTTTAAGACTGATTCAAGAGCATCATGGGGAGTTTCTCCAGTTGATAAATGAACCTGTTGAGGGTTCTGAAGGgtgagtttattgcttgccatatatggtatattaagttatccgttttacattt-cataaccattacttaattgatccattatctttcttcatataccgtttc---
upper sequence: Vv09s0018g01400.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G44910.2 (Glycine max), 5'ss of exon 10
AGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAGGTTCTGAAGGgtgagtgcttta-taagcatattggttagtacttagaagtttgaagcttatttaggtcctgt-ttggcacagttgtggcttttcattaaattcttttaaaaa
|||| ||||| |||||||| ||| ||| |||| | ||||||| ||||| ||||| || ||||| |||||||| || |||||| |||| |||||||||||||||||| | | ||||| |||| |||| || | |||| || | | | ||| | | || || ||| |
AGGAACTTGGAAAGCAGAATCCTAGTCTCTTAACACTAATTCAAGAGCATCATGCTGAATTTCTCCAGTTGATTAACGAACCTGTTGAGGGTTCTGAAGGgtgagtgtactgcttgccatatatgttatatgctagataattttattttatcattgtgttttactagcattaatcctttaatctgtttcatcgtttgcta--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71869952|gb|DT019007.1|DT019007EST: CATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAGGTTCTGAAGG GGATATATTTGATCAGCCTGAGCAAGAGTTGCCCCATGCTATCAATGTTAC
genomic: CATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAGGTTCTGAAGGgtgagtgctt ... ctacttccagGGATATATTTGATCAGCCTGAGCAAGAGTTGCCCCATGCTATCAATGTTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAGCTTGGCAAGCAGAACCCTCATCTTTTAAGATTAATTCAGGAGCACCATGCAGAGTTTCTTCAGTTGATCAATGAACCTCTTGAAGGTTCTGAAGGgtgagtgctttataagcatattggttagtacttagaagtttgaagcttatttaggtcctgtttggcacagttgtggcttttcattaaattcttttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG