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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGTCTAGCAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAGgtgatacatttaaacttatacatatgattatattgtttttatcttttggaaggggtataaaagtgcttacacttttgcttctaacctgatgtcttgatctaatgcttggtttactgggaatgattggcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03930.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03930.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 11
CGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGTCTAGCAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAGgt----------gatacatttaaacttatacatatg-------attatattgtttttatcttttggaaggggtataaaagtgcttacacttttgcttctaacctg---atgtcttgatctaatgcttggtttactgggaatgattggcag-----------------------
 ||||||||||||||||| |||||||| ||||||||  |  || | || ||||| | |||||| || ||||| ||||  || || | ||||||||| |||||          |||  | || |     |   | ||        || |||     | |||| |   |||   | |    |||| | |   | ||  | |    |    ||| |    || |||   | ||    |   | ||| | |  |                       
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTTGACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGgtttacaaccatgatctactttattcattgtttttgttcgagtgttctataaacctcatctctcaaaagttctgtttttgtgcctgctactatgtatatgggttagaaatgaccatctcgaatttgttgtcctttctaattgacttgttgtatgtattgcttgaactttttag

upper sequence: Vv09s0002g03930.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G083716_T03 (Zea mays), 5'ss of exon 10
CGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGTCTAGCAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAGgtgatacatttaaact-tatacatatgattatattgtttttatcttttggaag--gggtataaaagtgcttacacttttgcttctaacctgatgtcttgatctaatgcttggtttactgggaatgattggcag
|||||||||||||||||| |||||||| ||||||||  | ||||| || ||||| ||||| || || ||||| || || || || |  || ||||| ||||| | | |   || ||  |  |   | |||   |||        |   || |   | | | ||   |||| | |  ||    | |  | |||  |  ||| || |   | |                      
CGTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTTTGCGGCTTGCAGCTAAAGTCGACGCCATCAAGGATACACTGGAGAACGACGAGCAGAAGgtaaaa-acaaaatctgcaatcccgtaattcatttgaaagaggatggaggcaacagagcacaaccttgct-ataggttcaactatggc-tgacattctgaactgacattag----------------------

upper sequence: Vv09s0002g03930.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G095252_T02 (Zea mays), 5'ss of exon 5
CGTTGAGGAAGGTATTGTGGTTGGTGGCGGGTGCACATTGTTGCGTCTAGCAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAGgtgatacatttaaacttatacatatgattatattgtttttatcttttggaaggggtataaaagtgcttacacttttgcttctaacctgatgtcttgatctaatgcttggtttactgggaatgattggcag
 ||||||||||||||||| |||||||| || |||||  | ||||| || ||||| ||||| ||||| ||||| || || || || |  |||||||| ||||| | |     |||  | |  || |||||| |  |  |  |   |   ||   |   |        ||| |  || |  | |||| |||     |||  ||    | |                      
TGTTGAGGAAGGTATTGTTGTTGGTGGAGGATGCACCCTTTTGCGGCTTGCAGCTAAAGTCGATGCCATCAAGGATACACTGGAGAACGATGAGCAGAAGgtaagaa--caaaatctgtg-at-tgattaaaaagagtagac--tacagagcagccttg-------ttataggttcgagtataac-tgacacgctgaagtaccattag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363342|gb|EC926920.1|EC926920
EST:     CAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAATGATGAGCAAAAG                         GTTGGAGCAGATATTGTTAAGAGGGCACTAAGCTACCCAATGAAGTTAATC
genomic: CAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAGgtgatacatt ... tgattggcagGTTGGAGCAGATATTGTTAAGAGGGCACTAAGCTACCCAATGAAGTTAATC
EST: gi|77586832|gb|DV222559.1|DV222559
EST:     CAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAG                         GTTGGAGCAGATATTGTTAGGAGGGCACTAAGCTACCCAATGAAGTTAATC
genomic: CAGCAAAAGTTGATGCTATCAAAGACACTCTTGATAGTGATGAGCAAAAGgtgatacatt ... tgattggcagGTTGGAGCAGATATTGTTAAGAGGGCACTAAGCTACCCAATGAAGTTAATC