Sequence
atgc intronic sequence ATGC exonic sequenceGAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGCTTCGTTGACCTTGCTTGTTACCAAGCGCCAAGgttaagaggctcgtacccattatttgatgtgaatttgtcgtatttctttgatgatttttttttcctgaacaaaattttaaatgtttttcccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G115198_T01 (Zea mays), 5'ss of exon 9
-------GAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGCTTCGTTGACCTTGCTTGTTACCAAGCGCCAAGgttaagaggctcgtacccattatttgatgtgaatttgtcgtatttctttgatgatttttttttcctgaacaaaattttaaatgttttt---cccag--
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ATGAACTGAAGAGTGTAATTCCTGTGGATATGTTTCCTCATACTCCTCATATTGAGTGTGTATGCTTATTGGAGCTGCGTTGATTTTCAGTTTTGGTCAGgtaaacccactggagccttgt-----ttgggtgacgagtattcacctcaatccatataaggcattgttcggcactctagtatttaatacatattgggatccaata
upper sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G42890.1 (Glycine max), 5'ss of exon 10
GAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGCTTCGTTGACCT-TGCTTGTTACCAAGCGCCAAGgttaag---aggctcgtacccattatttgatgtgaatttgtcgtatttctttgatgatttttttttcctgaacaaaattt--taaatgtttttcccag--------
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-------TTACAGCCAGTTGACATGTTCCCACACACCCCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTCAGTAATCTGTGATCAATTAAAACGTTCCATTTCAAGgtcaggcactatttcattttctttgctacatttggaagttgggagtttgcaatttggatgtctgatgaatttttagtgactgttttgtttgaaatatctaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110360458|gb|EC923573.1|EC923573EST: TGTTTGCCTGTTGGAGCTTCGTTGATCCTTGCTTGTTACCAAGCGCCAAG AATGGCC-AAGCTCAGCCGCAGAAGGTAGCTCTGGTGGGAAGAAGACTCAG
genomic: TGTTTGCCTGTTGGAGCTTCGTTGA-CCTTGCTTGTTACCAAGCGCCAAGgttaagaggc ... tttttcccagAATGGCCCAAGCTCAGCCGCAGAAGGTAGCTCTGGTGGGAAGAAGACTCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGCTTCGTTGACCTTGCTTGTTACCAAGCGCCAAGgttaagaggctcgtacccattatttgatgtgaatttgtcgtatttctttgatgatttttttttcctgaacaaaattttaaatgtttttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT