Sequence
atgc intronic sequence ATGC exonic sequenceATTCAAAGGGTTATTTGGTGGATGAGGATGGATTTGATTACATGAAAATATCATTTTTGAGAGAGATCAAAAGTCAACAAAGAAGTTTGAGgttagtgttccctatcagttatattttctacttcttcacaacatttcttttatcagaactacttcacagcatttgataacttcaactttttcttcttcatatatgtggcatctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G28010.1 (Glycine max), 5'ss of exon 2
ATTCAAAGGGTTATTTGGTGGATGAGGATGGATTTGATTACATGAAAATATCATTTTTGAGAGAGATCAAAAGTCAACAAAGAAGTTTGAGgttagtgttccctatcagttatattttctacttcttcacaacatttcttttatcagaactacttcacagcatttgataacttcaactttttcttcttcatatatgtggcatctgcag
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ATTCTAGAGGATATTTGGTTGATGAGGATGGATTTGACTACATGAAAATATCATTTTTGAGAGACATCAAAGCTCAACAAAGAAgtttacggttagagt-----atcatttctgttgtctgtttatgc-----------tttat-------gcttcatattatgtggtataattttactgtccttgttcataaattgacaatatgcag
upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G01510.2 (Glycine max), 5'ss of exon 11
ATTCAAAGGGTTATTTGGTGGATGAGGATGGATTTGATTACATGAAAATATCATTTTTGAGAGAGATCAAAAGTCAACAAAGAAGTTTGAGgttagtgttccctatcagttatattttctacttcttcacaacatttcttttatcagaactacttcacagcatttgataacttcaactttttcttcttcatatatgtggcatctgcag
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ATTCTAGAGGATATTTGGTTGATGAGGATGGATTTGACTACATGAAAATATCATTTTTGAGAGACATCAAAGCTCAACAAAGAAGTTTACGgtttgt-------atcattcctgttgtctgtttatgctt--tattcttgctatta-----------------tgtataatttta--ctgtccttgttcataaatttacaatatgtag
upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G20930.2 (Glycine max), 5'ss of exon 11
ATTCAAAGGGTTATTTGGTGGATGAGGATGGATTTGATTACATGAAAATATCATTTTTGAGAGAGATCAAAAGTCAACAAAGAAGTTTGAGgttagtgttccctatcagttatattttctacttcttcacaacatttcttttatcagaactacttcacagcatttgataacttcaactttttcttcttcatatatgtggcatctgcag
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ATTCTAGAGGATATTTGGTTGATGAGGATGGATTTGACTACATGAAAATATCATTTTTGCGAGACATCAAAGCTCAACAAAGAAGTTTACGgt--gtgtatcatttctgttgtctgtttatgtttgctattatgtataattttactgtcctcgttcata--aattgacaatatgtag-------------------------------
upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G32870.1 (Glycine max), 5'ss of exon 2
ATTCAAAGGGTTATTTGGTGGATGAGGATGGATTTGATTACATGAAAATATCATTTTTGAGAGAGATCAAAAGTCAACAAAGAAGTTTGAGgttagtgttccctatcagttatattttctacttcttcacaacatttcttttatcagaactacttcacagcatttgataacttcaactttttcttcttcatatatgtggcatctgcag
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ATTCTATAGGATATTTGGTTAATGAGGATGGATTTGACTACATGAAAATATCATTTTTGAGAGGCATCAAAGCTCAACAAAGAAGTTTACGgtttgtgt-----ataatttttgttgtctgtttatgc-----------tttat-------gcttgctattatgt-ataatttca--ctgtccttcttcataaattgacaatatgtag
upper sequence: Vv09s0002g02530.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G51720.1 (Arabidopsis thaliana), 5'ss of exon 11
ATTCAAAGGGTTATTTGGTGGATGAGGATGGATTTGATTACATGAAAATATCATTTTTGAGAGAGATCAAAAGTCAACAAAGAAGTTTGAGgttagtgtt-ccctatca-gttatattttctacttcttcacaacatttcttttatcagaactacttcacagcatttgataacttcaactttttcttcttcatatatgtggcatctgcag
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ATTCAAAAGGATATTTGGTGGACGATGATGGATTTGATTATATGAAACTTGCATTCTTGAGAGATATAAAATCTCAACAGAGAAGTCTGAGgtatttgtcgtcctagaatactatagtatttgtcacttggtta-atcatatagatcccaactg-tacat-gtgtctgtta--tgcag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110374522|gb|EC939340.1|EC939340EST: ATGAAAATATCATTTTTGAGAGAGATCAAAAGTCAACAAAGAAGTTTGAG AGACTATTCAAAAACTTATGCTCGATCTAAGTACTATGATGAAGCAAAACC
genomic: ATGAAAATATCATTTTTGAGAGAGATCAAAAGTCAACAAAGAAGTTTGAGgttagtgttc ... gcatctgcagAGACTATTCAAAAACTTATGCTCGATCTAAGTACTATGATGAAGCAAAACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCAAAGGGTTATTTGGTGGATGAGGATGGATTTGATTACATGAAAATATCATTTTTGAGAGAGATCAAAAGTCAACAAAGAAGTTTGAGgttagtgttccctatcagttatattttctacttcttcacaacatttcttttatcagaactacttcacagcatttgataacttcaactttttcttcttcatatatgtggcatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT