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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag

Basic information

species Vitis vinifera
transcript Vv09s0002g02470.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 10
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag
|||||||| || || ||||| |||||||||||| |||| ||||| ||||||||||||||||||||||||||||  || | |  |    |  |   |  || |    ||  || |  |||     ||  |   ||| | |  |  ||||  |||| |  | | |||
TTATGGGATATAAACATGGATTCAGGCCCAGTTGCAACTTTCCAAGTTCATGAATATTTAAGACCTAAGgtgaagtttcgtaacctgaatga---tggcaaa----aatgtcaatgttaagacatg--tcacaatctaatgccgtgttaatttcatcttttgcag

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os06g36770.2 (Oryza sativa), 5'ss of exon 10
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatg--ctaattttaccctctgtttctttccttctctccag
 |||||||  | || ||||| ||||| || |||||||||||||||||||||||| ||||||| || ||||||||  |  | ||  | |||     | ||  | || ||    ||   |      | |||   |||  | ||| ||   ||||               
CTATGGGATCTAAACATGGATTCAGGTCCTGTTTCAACCTTCCAGGTTCATGAACATTTAAGGCCCAAGgtgagact-ttgtcaaccgaa-----tgactaaaaagaagccatatgatgactgatacataatctagctgtactctaattttcag-------------

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 10
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttacc-------ctctgtttctttccttctctccag---------
 | ||||| ||||| ||| |||| || |||||| |||| |||||||||||||| |||||||| || ||||| |   ||      | | | | |  | |  || |     ||    || |    |   |  ||| ||| ||        ||||| ||| |   ||   ||| |         
CTTTGGGATATTAACATGAACTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGGCCCAAGgtaattctgtacatgtta-agatgaataatccatacttctttgaggatcatgaacaataaacta-tttcactggagtaactctgattcatgtattgcttcctgaaactgcag

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G165418_T01 (Zea mays), 5'ss of exon 10
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag
 |||||||  | || ||| | |||||||| |||||||||||||| || |||||| ||||||||||||||||||  || || ||  | ||| | |  || | || | | ||  |  || |      | |   ||||||||   | |   |  || |          
CTATGGGATCTAAACATGAATTCAGGCCCTGTTTCAACCTTCCAAGTCCATGAACATTTAAGACCTAAGgtgaaatt-ctctcaactgaataat--taaaaagga-agctatttgatgaacaaaagtaatgtaattttatgatatcactactttcag--------

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 10
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctt-tcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag
|| |||||  | || ||||| |||||||||||| |||| || |||||||||||||| ||| | ||||||||||  || ||| || || |||         |   || | |     || ||    ||| |  || ||             |||||            
TTGTGGGATCTAAACATGGATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttcttatcatctgaatga----gaatgaaagagccgtatcaatatctgctgtaatctgatagcgtgggtaacatcttttgcag-------

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G42800.1 (Glycine max), 5'ss of exon 10
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattact-ctctg-catgcta-attttaccctctgtttctttccttctctccag
|| ||||||||||||||||| |||||||| ||| |||| |||||||||||||| ||||||||||| ||||| || || || |  | ||| ||||  |  |    |  | ||  |   |||| || || |  | || |  |     | | ||   ||    |   ||||
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTAAGACCCAAGgttagattcctgtgtttagataagtgatgaatt--atgaatttcattctactgctttgtcgagttataactggttatattttatgtttgaacatgccag

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 10
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag
|| ||||||||||||||||| |||||||| ||| |||| |||||||||||||| ||||| ||||| |||||         ||  | ||  | |  |||   |   |   ||||||  |  | ||||  |  ||| |       || ||| |||     |  ||||
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGgt---------ttgataagtgatgaattatgaatttc--tttctactgttttgtctgagttataactggttatgctttttgtttgaacgtg-ccag

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G20830.4 (Glycine max), 5'ss of exon 10
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag
||||||||||| |||||||| || || |||||| |||| |||||||||||||| |||||||| || ||||| || || |  |  |  ||  ||     ||  |||   || || | |||     |  ||  ||| |    | | | ||| |  ||          
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACGTTCCAGGTTCATGAGTATTTAAGGCCAAAGgttagattcccatgtttggatgag-----caatgaatttctgctgctttatcaagt-tatagtaactggctcttttttttttggccag--------

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 10
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag
||||||||||| |||||||| || || |||||| |||| ||||||||||| || |||||||| || ||||| || || |  |  | | | ||||  |   ||    || | || |  | || | | || |  |   | ||     | |  |||  || |  ||||
TTATGGGACATCAATATGGATTCTGGTCCAGTTGCAACATTCCAGGTTCACGAGTATTTAAGGCCAAAGgttagattcccatgtttatataagtaatgagcaatg-aattcctgc--tgctttat-caagtcatagtaactg---gctcatttttttttggccag

upper sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 12
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag
||||||||||| || |||||| |||| |||||  |||| |||||||||||||||||||| | ||| ||||| || || ||    |    | ||   ||||     | | ||     |   |  ||| ||| ||  ||  |  | || |  ||| |          
TTATGGGACATCAACATGGACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAGgtcagtttcctaatattttgagagagatacatttggcgagttg---gtgctttgctgaatggta--ttccctttgtggtcattttcag--------