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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATTATCAGACAGGAATTCTCAAATTGTACAGTGATAACAGTAGCTCACAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaattccaatccaagcctaagccagttttggagcattgggtttttggtgctaacccaacttacataaaatatcggttggtttgattttgtag

Basic information

species Vitis vinifera
transcript Vv09s0002g02440.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 12
AGAATTATCAGACAGGAATTCTCAAATTGTACAGTGATAACAGTAGCTCACAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaattccaatccaagcctaagccagttttggagcattgggtttttggtgctaacccaacttacataaaatatcggttggtttgattttgtag
  ||| || ||||| |||||  | || || ||||| |||||||| |||||||| ||||| ||  | |||||||| |||||||||||||||||||| |||||||||   || || |     |||   ||  ||| |    | |   | | |  | ||||  ||   |      |   |   ||   ||| |  |  ||
CAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtt-tttcatttttctcct---cctttttagatataatacttctattct-ctaattcactctgtt---acctttttttttcttgttgctaaag

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G20780.1 (Glycine max), 5'ss of exon 12
AGAATTATCAGACAGGAATTCTCAAATTGTACAGTGATAACAGTAGCTCACAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaattccaatccaagcctaagccagttttggagcattgggtttttggtgctaacccaacttaca-taaaatatcggttggtttgattt-tgtag-------
  | | |||||||| ||||| ||| | || ||||| ||||| || |||||||||||||| ||  | ||||| || ||||||||||||||||| || |||||||||   ||   ||   |     || || |      |      |  || |  | || |   || |    |  | | |   |||  |||| |  || |        
CAAGTCATCAGACAAGAATTTTCAGAATGCACAGTTATAACGGTGGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTATCCTATGgtatgttgttattatt--attaataggcactcc----gtgcctagacttggaagttacctatacatgtggttgagtgtaacttgtattgaatgatgcaaaatgttt

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G20360.1 (Glycine max), 5'ss of exon 11
AGAATTATCAGACAGGAATTCTCAAATTGTACAGTGATAACAGTAGCTCACAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaattccaatccaa---------gcctaagccagttttgga-gcattgggtttttggtgctaacccaacttacataaa-atatcggttggtttgattttgtag
  | | || ||||  |||||  || | || || ||  |||| || |||||||||||||| ||  | |||||||||||||||||||||||||| || |||||||| ||| |  | | ||           | |     | |||  ||  | || || ||||    |||  ||    | | |    || |   || | | | |  |||||
CAAGTGATTAGACGAGAATTTGCAGAATGCACGGTTGTAACCGTGGCTCACAGAGTTCCAACTGTAATAGATAGCGACATGGTCATGGTCCTGTCCTATGgtatacaagttaattacattttctttttcctttcaaaaatttcagatacgtttggctttt--ctctagtcctctctgcttcctcattttattttgctggttactgtag

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G20770.2 (Glycine max), 5'ss of exon 10
AGAATTATCAGACAGGAATTCTCAAATTGTACAGTGATAACAGTAGCTCACAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaattccaatccaagcctaagccagttttggagcattgggtttttggtgctaacccaacttacataaaatatcggttggtttgattttgtag--
  ||| || ||||| |||||   | | || || || ||||| || |||||||| ||||| ||  | |||||||| |||||||||||||||||||| |||||||||    | || | |  |      |   ||||      ||     |||  | |||   | | |  | ||    |     |    | ||||| ||   
CAAATAATTAGACAAGAATTTGTAGAATGCACGGTTATAACTGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatg----ttcattacttgttctttcatttttt------ttccaccttt--tactacttctattctc-tagttcactcagttacctcattttttaaag

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G01380.1 (Glycine max), 5'ss of exon 7
-----------AGAATTATCAGACAGGAATTCTC-----AAATTGTACAGTGATAACAGTAGCTCACAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaattccaatccaagcctaagccagttttggagcattgggtttttggtgctaacccaacttacataaaatatcggttggtttgattttgtag
               ||  |    | |  ||||      ||    || | |  ||   |||| |  ||  | | |  ||   | ||||  |    |    | |||||||    |||  || |  |   ||| ||    ||    |  | |||  ||  | |||     ||  |     | | ||||     || |    || | || ||    
ACAATGCCAATTATTTTGCCTTGGAAGGTTTCTTCTAAAAAGGAATAGAATTTTAGTTGTAGATTCCATTGATTCTGCA---ACAGATGCCATTTTACAAAGGgtcctcaggcatga-attc--tctgaatgcacagtta---taaatgtggctcacagagttccaactgtaatagacagtgacatggt-catggtcctgtcttatgtta---

upper sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G21250.2 (Arabidopsis thaliana), 5'ss of exon 11
AGAATTATCAGACAGGAATTCTCAAATTGTACAGTGATAACAGTAGCTCACAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaat-tccaatccaagcctaagccagttttggagcattgggtttttggtgctaacccaacttacataaaatatcggttggtttgattttgtag--
|||||||| ||| | || ||  || | ||||||||||||||||| || || ||||| || ||  ||||||| || |||||||||||||| ||||||| |||||  |||  |    ||  |  ||    ||  | |  | |       |  |  |  | ||| |   |  || |  | ||||||   ||| ||||| |   
AGAATTATAAGAGAAGAGTTTGCAGACTGTACAGTGATAACAGTTGCACATAGAGTACCAACTGTCATAGACAGTGACATGGTCATGGTTCTCTCTTTTGgtaaacaacattttctctcattctt--tcatctcttaaac------ctactcataatgaccaa---tgaatgagtt-tcggtt---ttggttttggatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110732027|gb|EE106952.1|EE106952
EST:     CAGAGTTCCCACAGTCATAGATAGCGACATGGTCATGGTCCTCTCTTATG                         GGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCT
genomic: CAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaatt ... gattttgtagGGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCT
EST: gi|110362756|gb|EC926308.1|EC926308
EST:     CAGAGTTCCCACAGTCATAGATAGCGACATGGTCATGGTCCTCTCTTATG                         GGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCT
genomic: CAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaatt ... gattttgtagGGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCT
EST: gi|110381535|gb|EC934720.1|EC934720
EST:     CAGAGTTCCCACAGTCATAGATAGCGACATGGTCATGGTCCTCTCTTATG                         GGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCT
genomic: CAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaatt ... gattttgtagGGAAGCTTGTGGAGTATGATGAGCCCTCAAATCTGATGGAAACCAACTCCT