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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaacaattcgccaaaaattttccctttttactttatttatttgtttatgctttggtttggcatctcattaacttgtgaaaatcctttttgttcatctgctatgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g00880.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 5'ss of exon 10
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaa-caattcgccaaaaattttccctttttactttatttatttgtttatgctttggtttggcatctcattaacttgtgaaaatcctttttgttcatctgctatgcag
||| ||| || || |  |||| | | || | |||||| |||||||| ||||| || ||||||||||| ||||||||| |||  || |||      |   |  |  |||    |  ||||||  ||| |    |  ||| |    || |||  |||  || |||| | |      |  || | || |   |        
AAGGTGGAAAGGATAATGCAAATGAAGATGGTCCTGAAAACAACCCACAGTACACGACTGTTTATGTTGGCAATCTTCCTCATGATgtaacctctcccatttctgaaacaaatttctttttgttttgtgctgtattttgt----tgtttttccataccagtaacgtttctg--cctcttatatttactag--------

upper sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM5G835213_T02 (Zea mays), 5'ss of exon 10
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaacaattcgccaaaaattttccctttttactttatttatttgtttatg--ctttggtttgg-catctcattaacttgtgaaaatcctttttgttcatctgctatgcag-------------
||  ||| |||||||   ||| | | || | |||||| || |||||||||| ||| ||||||||||| ||||||||| |||  ||||||  |  |         || |  | |  | | |  ||  | |  |||| | ||   ||   ||||  | |  | ||   |||| |   | |||||| ||  |||  | ||                
AATCTGGAAAAGAGAATCCAAATGAAGATGGTCCTGAAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactcttccaatagaacagctgctgtctatgtttactgtgcttgtgtttggctttctatttgctcttaccttttttttgttagctttctttttatt-gtctaatttgtcttattttttttcag

upper sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 10
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaacaattcgccaaaaattttccctttttactttatttatttgtttatgctttggtttggcatctcattaacttgtgaaaatcctttttgttcatctgctatgcag
||||||||||||||||| | |  | ||| |||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||||| ||     ||  |      ||||   |||| | ||||  | |      || |  |    |    | | |||   |||  ||       ||||   |  |   ||    
AAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACTGTTTATGTGGGTAACCTTGCTCCAGAGgtaagagc---ttttcttgtgttttttaattttaattttacatttagaacaataccatttcatcaactgttatttgattgaaaag------tttgcaaacttataattt--

upper sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 10
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaac-aattcgccaaaaattttccctttttactttatttatttgtttat--gctttggtttggcatctcattaacttgtgaaaatcctttttgttcatctgctatgcag
   |||||||||||||  | |  | ||| |||||||| ||||| ||||||||||| || ||||||||||| || |||||||| ||||||  | || | |        ||||||  |  || |   || | |    || |    || |  |||||    | |  |  |||  ||  |  || |  |||||           
---ATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagactagtgtttttttaattttgacaattaagaataat-accaattcaccaactgttatttggt---tgaaaagtttgc-aagcttattatgattcatgc---------

upper sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G17370.1 (Arabidopsis thaliana), 5'ss of exon 10
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaacaattcgccaaaaattttccctttttactttatttatttgtttatgctttggtttggcatctcattaacttgtgaaaatcctttttgttcatctgctatgcag
| ||||||||||| ||  | | |  ||| |||||||| |||||  ||||||| ||||||||||| || || ||||||||||||||||||  | |          ||||  |    |   || | | |   ||   | |  | |        | | |  || | |     | ||  |  || | ||            
AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaata---------gaaaaactgttataggtattctgtgacttaactcaaccatcatccatacctttt-ttgaatcaaagatattttcgttatccag-----------

upper sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G17370.2 (Arabidopsis thaliana), 5'ss of exon 10
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaacaattcgccaaaaattttccctttttactttatttatttgtttatgctttggtttggcatctcattaacttgtgaaaatcctttttgttcatctgctatgcag
  ||||||||||| ||  | | |  ||| |||||||| |||||  ||||||| ||||||||||| || || ||||||||||||||||||  | |          ||||  |    |   || | | |   ||   | |  | |        | | |  || | |     | ||  |  || | ||            
--GATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaata---------gaaaaactgttataggtattctgtgacttaactcaaccatcatccatacctttt-ttgaatcaaagatattttcgttatccag-----------

upper sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 10
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaacaattcgccaaaaattttccctttttactttattt-----------atttgttta---tgctttggtttggcatctcatta----acttgtgaaaatcctttttgttcatctgctatgcag
| |||||||||||||||  || | | ||  | ||||| || ||  |||||| ||| |||||||||||||| || |||||||||||||||    |  || | | |  || |   |||| | |   |||              ||| |||    | ||||| |   |  |  |||||    | ||  |  |   | ||      ||||    |||||
AGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGgtac---attatccactaggaagtgctccttgtaatactatcacaacaaaaacagtttatttgaggttctttgatgaagttttacattagtagatttcgggtacatcgttacagctatctatcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71890328|gb|DT039383.1|DT039383
EST:     ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAG                         GTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
genomic: ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaaca ... tgctatgcagGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
EST: gi|110409533|gb|EC975197.1|EC975197
EST:     ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAG                         GTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
genomic: ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaaca ... tgctatgcagGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
EST: gi|33409957|gb|CF215584.1|CF215584
EST:     ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAACCTTGCTCCAGAG                         GTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGAGTA
genomic: ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaaca ... tgctatgcagGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
EST: gi|30253103|gb|CB970654.1|CB970654
EST:     ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAACCTTGCTCCAGAG                         GTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGAGTA
genomic: ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaaca ... tgctatgcagGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
EST: gi|110360310|gb|EC923266.1|EC923266
EST:     AGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAG                         GTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
genomic: AGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaaca ... tgctatgcagGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
EST: gi|110696392|gb|EE072470.1|EE072470
EST:     ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAACCTTGCTCCAGAG                         GTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGAGTA
genomic: ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaaca ... tgctatgcagGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
EST: gi|110358441|gb|EC922654.1|EC922654
EST:     ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAG                         GTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
genomic: ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaaca ... tgctatgcagGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
EST: gi|110357937|gb|EC921792.1|EC921792
EST:     ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAG                         GTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
genomic: ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaaca ... tgctatgcagGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
EST: gi|71872494|gb|DT021549.1|DT021549
EST:     ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAACCTTGCTCCAGAG                         GTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGAGTA
genomic: ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaaca ... tgctatgcagGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA
EST: gi|71876949|gb|DT026004.1|DT026004
EST:     ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAACCTTGCTCCAGAG                         GTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGAGTA
genomic: ACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaaca ... tgctatgcagGTGACACAGCTTGATCTCCATCGTCACTTTCATACTTTTGGTGCTGGGGTA