Sequence
atgc intronic sequence ATGC exonic sequenceATATCCTGAAGCTTCTTTTGCCGGGAGACTGGAAAGAGATTCCATACTTCAGGAGATTGGATAAATTAGTTGGAGTTCCAGTGATCAATGTTCATATATGgttagttctatagttttggatgttctctagcttatttaatgttaaaactatttgtgctagaaagtctaagaaatagaacataagaataaattaggaaatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G410515_T01 (Zea mays), 5'ss of exon 10
ATATCCTGAAGCTTCTTTTGCCGGGAGACTGGAAAGAGATTCCATACTTCAGGAGATTGGATAAATTAGTTGGAGTTCCAGTGATCAATGTTCATATATGgttagtt--ctatagttttggatgtt---ctctagcttatttaat------gttaaaactat--ttgt--gctagaaagtctaagaaata-----gaacataagaataaattaggaaatg----
||||| | ||||||||| | || ||| |||| || ||| | || |||| || | |||| || || || |||||||| || |||||||||||||||||||||||| | | | || | | | || | || | || || | ||| |||| | | | | ||| ||| || | || | | |
ATATCTTCAAGCTTCTTGTACCTCAAGAGTGGAGTGAAATTACTTATTTCAAGAAACTGGAGAAGTTGGTGGGAGTTCCTGTTATCAATGTTCATATATGgttagttgattgaaatatttggttctgaactgtgaattgcctgattcccttgtctggattatgcttgttcgtcgagacatttctgaagctttgctgaaaatttctgttgttttgaatacctcag
upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA18G00720.2 (Glycine max), 5'ss of exon 5
ATATCCTGAAGCTTCTTTTGCCGGGAGACTGGAAAGAGATTCCATACTTCAGGAGATTGGATAAATTAGTTGGAGTTCCAGTGATCAATGTTCATATATGgttagttctatagttttggatgttctctagcttatttaatgttaaaactatttgtgctagaaagtctaagaaatagaa-cataagaataa-attaggaaatg
|||| |||||||||||| | || | ||||||||| ||||||||| ||| ||||||||||||||||||||| || ||||| || |||||||| ||||||| ||| || | ||| |||||| | | ||| | || | | | || | || | || | ||| | || ||| | |
ATATTCTGAAGCTTCTTCTACCAGATAACTGGAAAGGGATTCCATATTTCCAGAGATTGGATAAATTAGTTGGCGTCCCAGTCATAAATGTTCACATATGgtaagtg--atggcttttgatgttgaaaaccatatgcatgcatatgttaaactcctattttaaattaaattattacagtcatcattatttcattttgctgtc
upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA11G36810.1 (Glycine max), 5'ss of exon 9
ATATCCTGAAGCTTCTTTTGCCGGGAGACTGGAAAGAGATTCCATACTTCAGGAGATTGGATAAATTAGTTGGAGTTCCAGTGATCAATGTTCATATATGgttagttctatagttttggatgttctctagcttatttaatgttaaaactatttgtgctagaaagtctaagaaatagaa-cataagaataa-attaggaaatg
|||| |||||||||||| | || | ||||||||| |||||| || ||| |||| ||||||||||||||||||| ||||| || |||||||| ||||||| ||| || | ||| || ||| | | ||| | || | | || | || | || | ||| || || ||| |
ATATTCTGAAGCTTCTTCTACCAGACAACTGGAAAGGGATTCCGTATTTCCAGAGACTGGATAAATTAGTTGGAGTCCCAGTCATAAATGTTCACATATGgtaagta--atggcttttgacgtttaaaaccatatgcatgcatatgttagactccaattttaaattaaattattacagtcatcagtatttcatttttctgtc
upper sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT4G14210.2 (Arabidopsis thaliana), 5'ss of exon 10
ATATCCTGAAGCTTCTTTTGCCGGGAGACTGGAAAGAGATTCCATACTTCAGGAGATTGGATAAATTAGTTGGAGTTCCAGTGATCAATGTTCATATATGgttagt---tctatagttttggatgttctctagcttatttaatgttaaaactatttgtgctagaaagtctaagaaatagaacataagaataaattaggaaatg
||||||||||||| ||||| || | ||||||||| || || ||||||| || ||||||||||||||||||||| ||||| || |||||||||||||||||||| | | | | |||| ||| | |||| | || | | | | |||| | | | | |||| ||
ATATCCTGAAGCTCCTTTTACCAGATCCCTGGAAAGAAATACCGTACTTCAAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATATATGgttagtgaaaccgttatctcccttgttttcttttggccattatgtgagaatcgagattacatgcaggtctta--actgctgtgaactaatattgcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110392879|gb|EC957437.1|EC957437EST: AGGAGATTGGATAAATTAGTTGGAGTTCCAGTGATCAATGTTCATATATG GTTTGACAGGAAACTGAAGAACACATACGATCATCTTCTTTTCAGCAG
genomic: AGGAGATTGGATAAATTAGTTGGAGTTCCAGTGATCAATGTTCATATATGgttagttcta ... ttgattgcagGTTTGACAGGAAACTGAAGAACACATACGATCATCTTCTTTTCAGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATCCTGAAGCTTCTTTTGCCGGGAGACTGGAAAGAGATTCCATACTTCAGGAGATTGGATAAATTAGTTGGAGTTCCAGTGATCAATGTTCATATATGgttagttctatagttttggatgttctctagcttatttaatgttaaaactatttgtgctagaaagtctaagaaatagaacataagaataaattaggaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaat